Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35160 1075 / 0 Endomembrane protein 70 protein family (.1.2) AT4G12650 846 / 0 Endomembrane protein 70 protein family (.1) AT2G24170 515 / 6e-176 Endomembrane protein 70 protein family (.1) AT5G25100 514 / 2e-175 Endomembrane protein 70 protein family (.1.2) AT3G13772 509 / 2e-173 AtTMN7 transmembrane nine 7 (.1) AT5G10840 508 / 3e-173 Endomembrane protein 70 protein family (.1) AT1G55130 499 / 7e-170 AtTMN6 transmembrane nine 6, Endomembrane protein 70 protein family (.1) AT1G14670 256 / 7e-77 Endomembrane protein 70 protein family (.1) AT2G01970 256 / 2e-76 Endomembrane protein 70 protein family (.1) AT1G08350 246 / 7e-73 Endomembrane protein 70 protein family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027831 [exp] 1271 / 0 AT5G35160 1104 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10016072 [exp] 852 / 0 AT4G12650 1123 / 0.0 Endomembrane protein 70 protein family (.1) Lus10019073 [exp] 766 / 0 AT5G35160 749 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10000222 [exp] 515 / 6e-176 AT5G10840 1071 / 0.0 Endomembrane protein 70 protein family (.1) Lus10015624 [exp] 513 / 4e-175 AT3G13772 1133 / 0.0 transmembrane nine 7 (.1) Lus10042415 [exp] 512 / 1e-174 AT5G10840 1129 / 0.0 Endomembrane protein 70 protein family (.1) Lus10026254 [exp] 511 / 5e-174 AT5G10840 1129 / 0.0 Endomembrane protein 70 protein family (.1) Lus10037643 [exp] 508 / 3e-173 AT3G13772 1134 / 0.0 transmembrane nine 7 (.1) Lus10031308 [exp] 239 / 2e-70 AT2G01970 1061 / 0.0 Endomembrane protein 70 protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G113500 [exp] 1113 / 0 AT5G35160 1127 / 0.0 Endomembrane protein 70 protein family (.1.2) Potri.006G189300 [exp] 1105 / 0 AT5G35160 1122 / 0.0 Endomembrane protein 70 protein family (.1.2) Potri.002G217300 [exp] 836 / 0 AT4G12650 1122 / 0.0 Endomembrane protein 70 protein family (.1) Potri.014G172200 [exp] 827 / 0 AT4G12650 1115 / 0.0 Endomembrane protein 70 protein family (.1) Potri.018G018400 [exp] 525 / 6e-180 AT5G10840 1070 / 0.0 Endomembrane protein 70 protein family (.1) Potri.006G184200 [exp] 522 / 1e-178 AT2G24170 961 / 0.0 Endomembrane protein 70 protein family (.1) Potri.018G106600 [exp] 513 / 3e-175 AT2G24170 971 / 0.0 Endomembrane protein 70 protein family (.1) Potri.003G038700 [exp] 506 / 2e-172 AT3G13772 1085 / 0.0 transmembrane nine 7 (.1) Potri.006G264500 [exp] 506 / 8e-172 AT5G10840 1059 / 0.0 Endomembrane protein 70 protein family (.1) Potri.017G144181 [exp] 246 / 8e-73 AT5G37310 979 / 0.0 Endomembrane protein 70 protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02990 [flax] [poplar] EMP70 Endomembrane protein 70
Representative CDS sequence Show only first row Show all	>Lus10005060 pacid=23149028 polypeptide=Lus10005060 locus=Lus10005060.g ID=Lus10005060.BGIv1.0 annot-version=v1.0 ATGCATTCTTCCGCTCGACTGGAGATCTGGATCTGTGTCCTTCTGCTAGCTTTCCAAACGGGAAACGGATTCTATCTTCCCGGCAGCTACCCTCACAAGT ACGGCATCGGCGATCCTCTGTCCGTGAAAGTGAACTCCCTCACTTCGATCGAAACCGAGATGCCATTCAGCTACTACAGTTTGCCATTCTGCAAGCCGCC TGAAGGCGTGAAAGACAGCGCCGAAAATCTCGGCGAGCTTCTGATGGGAGATCGGATCGAGAACTCTCCTTACAAGTTCAAGATGTACACGAACGAGTCA CAGATCTTCCTCTGCCAATCGGCTCCTTTGTCTGGTGATGATTTCAAGCTTATGAAGAAGAGGATCGACGAGATGTACCAGGTGAATTTGATTCTTGATA ATCTGCCTGCGATTAGGTATACTAATAAGGAGTCGTTTATGGTGAGATGGACTGGCTATCCCGTCGGAATTAAGGTTCAGGACGCTTATTACATGTTTAA TCATTTGAAGTTCACTGTTCTTGTTCATAAGTATGAGGAAGCCAACATGGCTCGTGTTATGGGGACTGGTGATGCTGCTGAGATGATCCCCAACACGGCT GGATCATCGGATGAGACGCCTGGTTATATGGTGGTCGGATTCGAGGTTGTTCCTTGTAACGTTGTGCACGATCCGAAATCTTTGAAGAAGGATTTGAAGA TGTATGGGAAGTATCCTTCGAATATCAAGTGTGATCCCACCACTGTGGCATTGCCGATCAAGGAGAACGACCCTATGGTTTTCACTTACGAGGTCACGTT CGAGGAGAGTGATATCAAGTGGCCTTCAAGATGGGATGCGTATTTGAAAATGGAAGGTTCGAAGGTCCACTGGTTCTCGATCATGAACTCCATGATGGTG ATTACTTTCCTTGCTGGTATCGTACTCGTGATCTTTTTGAGAACTGTCAGGCGCGATCTTACTCGTTACGAGGAGCTGGATAAGGAGATGAATGAGGAGC TCTCCGGATGGAAGCTTGTCGTAGGGGATGTATTCCGTGCCCCTTCGAATTCGGCTCTTCTCTGTGTTATGATCGGCAACGGTGTTCAGATTCTCGGAAT GGCCATCGTGACCGTCCTATCCGCAGCTCTTGGATTCATGTCTCCCGCATCTCGCGGAACTCTTTTGACTGGGATGCTAATCTTCTTCATGATCCTTGGA ATCGCTGCTGGATATGCAGCGGTTCGACTGTGGAGAACGATGGGATGTGGTGACGGAAAAGGATGGGCTTCGGTTTCATGGAAAGTTTCATGTTTCTTCC CCGGCATTGCATTCGTCATCCTAACCACATTGAACTTCCTGCTATGGCACAGTAATTCCACCGGTGCGATACCGTTCTCATTATTCGTGGTACTTATCCT TCTCTGGTTCTGCATCTCGGTTCCGTTGACTTTAATCGGAGGATACTTTGGTTCAAAAGCGCCTCATATCGAGTATCCGGTCCGTACGAACCAGATTCCT CGTGAAATCCCGGCTCAAAAGTACCCATCTTGGCTGTTAGTTCTCGGCGCAGGGACTCTGCCATTCGGTACGCTCTTCATCGAGCTCTTCTTTATCATGT CCAGCATATGGATGGGCCGTGTTTACTACGTGTTTGGGTTCCTTCTGATCGTGTTCGTACTTCTCGTTGTGGTTTGTGCTGAAGTTTCGCTTGTGTTGAC GTACATGCATCTGTGTGTTGAGGATTGGAAATGGTGGTGGAAATCTTTCTTTGCGTCTGGTTCGGTTGCCATTTACATATTCTTGTACTCCATAAACTAC CTGGTTTTCGATCTTAAAAGCCTCAGCGGGCCCGTCTCGGCCACGCTCTACCTGGGATATTCGTTGCTGATGGTTTTGGCTATCATGCTCGCCACCGGCA CTGTCGGGTTCCTCTCGTCGTTCTGGTTCGTGCATTACTTATTCTCGTCGGTAAAGCTGGATTGA
AA sequence Show only first row Show all	>Lus10005060 pacid=23149028 polypeptide=Lus10005060 locus=Lus10005060.g ID=Lus10005060.BGIv1.0 annot-version=v1.0 MHSSARLEIWICVLLLAFQTGNGFYLPGSYPHKYGIGDPLSVKVNSLTSIETEMPFSYYSLPFCKPPEGVKDSAENLGELLMGDRIENSPYKFKMYTNES QIFLCQSAPLSGDDFKLMKKRIDEMYQVNLILDNLPAIRYTNKESFMVRWTGYPVGIKVQDAYYMFNHLKFTVLVHKYEEANMARVMGTGDAAEMIPNTA GSSDETPGYMVVGFEVVPCNVVHDPKSLKKDLKMYGKYPSNIKCDPTTVALPIKENDPMVFTYEVTFEESDIKWPSRWDAYLKMEGSKVHWFSIMNSMMV ITFLAGIVLVIFLRTVRRDLTRYEELDKEMNEELSGWKLVVGDVFRAPSNSALLCVMIGNGVQILGMAIVTVLSAALGFMSPASRGTLLTGMLIFFMILG IAAGYAAVRLWRTMGCGDGKGWASVSWKVSCFFPGIAFVILTTLNFLLWHSNSTGAIPFSLFVVLILLWFCISVPLTLIGGYFGSKAPHIEYPVRTNQIP REIPAQKYPSWLLVLGAGTLPFGTLFIELFFIMSSIWMGRVYYVFGFLLIVFVLLVVVCAEVSLVLTYMHLCVEDWKWWWKSFFASGSVAIYIFLYSINY LVFDLKSLSGPVSATLYLGYSLLMVLAIMLATGTVGFLSSFWFVHYLFSSVKLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35160			Endomembrane protein 70 protei...		Lus10005060 [exp]	0	1
AT5G35160			Endomembrane protein 70 protei...		Lus10027831 [exp]	1.0	0.9637
AT5G52180			unknown protein		Lus10015101 [exp]	2.4	0.9092
AT1G24330			ARM repeat superfamily protein...		Lus10037005 [exp]	3.6	0.8897
AT4G12650			Endomembrane protein 70 protei...		Lus10016072 [exp]	4.2	0.9353
AT3G58050			unknown protein		Lus10017239 [exp]	5.5	0.8959
AT1G18580		GAUT11	galacturonosyltransferase 11 (...		Lus10013506 [exp]	6.0	0.9272
AT1G21370			unknown protein		Lus10029764 [exp]	6.5	0.9092
AT5G49810		MMT	methionine S-methyltransferase...		Lus10026263 [exp]	7.2	0.8466
AT2G01970			Endomembrane protein 70 protei...		Lus10031876 [exp]	9.2	0.9108
AT1G80510			Transmembrane amino acid trans...		Lus10003054 [exp]	9.5	0.9011

Compare expression of checked genes

Lus10005060 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.