Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75990 685 / 0 PAM domain (PCI/PINT associated module) protein (.1) AT1G20200 685 / 0 HAP15, EMB2719 HAPLESS 15, EMBRYO DEFECTIVE 2719, PAM domain (PCI/PINT associated module) protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027832 [exp] 845 / 0 AT1G20200 756 / 0.0 HAPLESS 15, EMBRYO DEFECTIVE 2719, PAM domain (PCI/PINT associated module) protein (.1) Lus10034469 [exp] 791 / 0 AT1G20200 798 / 0.0 HAPLESS 15, EMBRYO DEFECTIVE 2719, PAM domain (PCI/PINT associated module) protein (.1) Lus10025072 [exp] 321 / 1e-105 AT1G75990 338 / 3e-112 PAM domain (PCI/PINT associated module) protein (.1) Lus10022337 [exp] 70 / 2e-12 AT5G14250 570 / 0.0 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Lus10041586 [exp] 69 / 3e-12 AT5G14250 450 / 2e-154 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G176600 [exp] 717 / 0 AT1G20200 680 / 0.0 HAPLESS 15, EMBRYO DEFECTIVE 2719, PAM domain (PCI/PINT associated module) protein (.1) Potri.009G136900 [exp] 714 / 0 AT1G20200 676 / 0.0 HAPLESS 15, EMBRYO DEFECTIVE 2719, PAM domain (PCI/PINT associated module) protein (.1) Potri.002G017700 [exp] 514 / 3e-180 AT1G20200 554 / 0.0 HAPLESS 15, EMBRYO DEFECTIVE 2719, PAM domain (PCI/PINT associated module) protein (.1) Potri.002G017800 [exp] 439 / 8e-151 AT1G75990 475 / 5e-165 PAM domain (PCI/PINT associated module) protein (.1) Potri.017G066300 [exp] 72 / 2e-13 AT5G14250 522 / 0.0 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Potri.001G334200 [exp] 72 / 2e-13 AT5G14250 507 / 1e-179 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08375 [flax] [poplar] Rpn3_C Proteasome regulatory subunit C-terminal CL0123 [flax] [poplar] HTH PF01399 [flax] [poplar] PCI PCI domain
Representative CDS sequence Show only first row Show all	>Lus10005061 pacid=23149014 polypeptide=Lus10005061 locus=Lus10005061.g ID=Lus10005061.BGIv1.0 annot-version=v1.0 ATGGCGACTCAAGATGTTGATATGAAGGAGGTTGCTGCCGCCCCCGCAGCTGCGGAAGCTCCGTCGGATTCTATTGTTCCAGCCACGCCATCGGTTCTTC AACATTTGAAGGAGATTGCTTCGTTGATTGAGACCGGGACGTATGCTCGTGAGGTTCGGAGGATTGCGCGGGCAATCAGGCTGACAATGGCGCTGAGGAG GAAGCTGAAGACCTCGATTGTCTCGGCTTTCCTTAACTTTGCGCTTACTCCTGGATCGGAGCCTCATGTTCGTCTGTGCTCTTATCTTCCCAAGGAGGAT GACTATGAGATGGAAGTTGATACTGCGACATCTGTGGTTCAGGCTTCTGTGAAGCATTCCCTACCCGAGCTGGAGATCTATTGCTACTTACTGGCTAAAG CTTGTTCATCAGCTAGCATTGCTAAGCTTAAGAACCTGAACAGAAGGACTGTTGATGTTTTAGCATCCAGGCTTTTCTTCTACTACTCCCTTAGCTACGA GCTCACTGGTGATCTTGCTGAGATAAGAGGAAACCTTCTTGCACTCCACCGGATTGCAACATTGCGCCGTGATGAGCTGGGTCAGGAAACCCTTCTCAAT CTGCTGCTGCGCAATTACCTCCACTACAATTTGTATGATCAAGCAGAAAAGCTGAGGTCCAAAGCCCCACGATTTGAAGCTCATTCGAATCAGCAGTTCT GTCGGTATCTATTTTACCTTGGAAAGATTCGGACGATTCAATTGGAATACACAGATGCCAAGGAGTCCCTCCTTCAAGCTGCTAGAAAAGCCCCCATTGC AGCCCTTGGTTTCCGAATTCAATGCACCAAATGGGCCGTTATCGTCAGATTGCTTCTAGGAGAGATTCCTGAAAGGACCGTTTTTATGCAGAAAGGCATG GAAAATGCTCTGAGGCCGTACTTCGAGCTGACCAATGCTGTACGGATAGGCGATCTGGAGCTCTTCAAATCCGTAGCCGAGAAGTTCTCGACCACTTTCA ATTCGGACCGGACCCACAACCTGATTGTTCGTCTGAGGCATAACGTCATAAGGACGGGACTCAGAAATATCAGCATCTCTTACTCTCGAATCTCGTTGGC CGATGTCGCCAAGAAGCTGAGGCTGGATTCACCGAACCCGGTTGCTGATGCCGAGAGCATCGTAGCCAAGGCAATCCGAGATGGCGCCATCGATGCAACT ATCAATCACAAGAACGGGTGGATGGTATCGAAGGAGACTGGGGACATCTACTCGACAAACGAGCCTCAAATGGCGTTCAACTCCAGGATCGCTTTCTGCC TCAATATGCATAATGAGGCTGTCCGGGCACTTCGGTTCCCTCCAAACTCCCGGGAGGAGAAAGAAAGTGCGGAGAAGAGAAGGGAGAGACAGCAGCAGGA GCAGGAGCTTGCTCAACACATTGCTGAGGAAGATGATGACGAGTTCTAA
AA sequence Show only first row Show all	>Lus10005061 pacid=23149014 polypeptide=Lus10005061 locus=Lus10005061.g ID=Lus10005061.BGIv1.0 annot-version=v1.0 MATQDVDMKEVAAAPAAAEAPSDSIVPATPSVLQHLKEIASLIETGTYAREVRRIARAIRLTMALRRKLKTSIVSAFLNFALTPGSEPHVRLCSYLPKED DYEMEVDTATSVVQASVKHSLPELEIYCYLLAKACSSASIAKLKNLNRRTVDVLASRLFFYYSLSYELTGDLAEIRGNLLALHRIATLRRDELGQETLLN LLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPIAALGFRIQCTKWAVIVRLLLGEIPERTVFMQKGM ENALRPYFELTNAVRIGDLELFKSVAEKFSTTFNSDRTHNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSPNPVADAESIVAKAIRDGAIDAT INHKNGWMVSKETGDIYSTNEPQMAFNSRIAFCLNMHNEAVRALRFPPNSREEKESAEKRRERQQQEQELAQHIAEEDDDEF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20200		HAP15, EMB2719	HAPLESS 15, EMBRYO DEFECTIVE 2...		Lus10005061 [exp]	0	1
AT5G53620			unknown protein		Lus10008846 [exp]	3.7	0.9234
AT1G16610		RNPS1, SR45	arginine/serine-rich 45 (.1.2....		Lus10031212 [exp]	4.9	0.9288
AT4G16180			unknown protein		Lus10017062 [exp]	5.7	0.9227
AT4G34110		PABP2, PAB2, AT...	ARABIDOPSIS POLY\(A\) BINDING ...		Lus10002835 [exp]	14.1	0.9157
AT1G20200		HAP15, EMB2719	HAPLESS 15, EMBRYO DEFECTIVE 2...		Lus10027832 [exp]	16.7	0.9026
AT2G01720			Ribophorin I (.1)		Lus10040410 [exp]	16.9	0.9212
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Lus10010782 [exp]	18.7	0.9111
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10015204 [exp]	18.8	0.9180
AT4G34110		PABP2, PAB2, AT...	ARABIDOPSIS POLY\(A\) BINDING ...		Lus10027886 [exp]	18.8	0.9160
AT5G26360			TCP-1/cpn60 chaperonin family ...		Lus10034682 [exp]	19.2	0.9197

Compare expression of checked genes

Lus10005061 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.