Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16640 1100 / 0 ATTOC132, TOC132 multimeric translocon complex in the outer envelope membrane 132 (.1) AT3G16620 1100 / 0 ATTOC120 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) AT4G02510 650 / 0 TOC86, TOC160, PPI2, ATTOC159, TOC159 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) AT5G20300 289 / 1e-82 Toc90 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) AT5G05000 134 / 4e-34 ATTOC34, OEP34, TOC34 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34, translocon at the outer envelope membrane of chloroplasts 34 (.1.2.3) AT1G02280 119 / 3e-29 PPI1, ATTOC33, TOC33 PLASTID PROTEIN IMPORT 1, translocon at the outer envelope membrane of chloroplasts 33 (.1.2) AT4G15810 91 / 5e-18 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G02482 72 / 2e-14 chloroplast outer envelope GTP-binding protein, putative (.1) AT1G33950 52 / 1e-06 Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2) AT4G09930 47 / 7e-05 Avirulence induced gene (AIG1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027835 [exp] 1499 / 0 AT3G16620 645 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Lus10006048 [exp] 636 / 0 AT4G02510 1178 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Lus10006471 [exp] 456 / 7e-144 AT5G20300 754 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Lus10027712 [exp] 456 / 2e-143 AT5G20300 744 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Lus10028707 [exp] 310 / 1e-95 AT4G02510 498 / 2e-165 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Lus10028706 [exp] 328 / 3e-95 AT4G02510 548 / 3e-175 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Lus10043414 [exp] 241 / 2e-67 AT4G02510 387 / 2e-119 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Lus10034170 [exp] 236 / 3e-64 AT2G16640 374 / 1e-111 multimeric translocon complex in the outer envelope membrane 132 (.1) Lus10004619 [exp] 188 / 3e-53 AT5G20300 239 / 3e-73 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G131200 [exp] 1192 / 0 AT3G16620 1129 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Potri.004G171600 [exp] 1171 / 0 AT3G16620 1128 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Potri.009G131300 [exp] 1077 / 0 AT3G16620 1111 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Potri.010G014300 [exp] 608 / 0 AT4G02510 812 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Potri.008G224900 [exp] 603 / 0 AT4G02510 847 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Potri.008G225000 [exp] 587 / 0 AT4G02510 790 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Potri.018G123300 [exp] 501 / 4e-160 AT5G20300 796 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Potri.006G063500 [exp] 288 / 2e-82 AT5G20300 865 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Potri.002G183400 [exp] 134 / 3e-34 AT1G02280 417 / 6e-148 PLASTID PROTEIN IMPORT 1, translocon at the outer envelope membrane of chloroplasts 33 (.1.2) Potri.014G109400 [exp] 132 / 8e-34 AT1G02280 422 / 4e-150 PLASTID PROTEIN IMPORT 1, translocon at the outer envelope membrane of chloroplasts 33 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF04548 [flax] [poplar] AIG1 AIG1 family CL0023 [flax] [poplar] PF11886 [flax] [poplar] TOC159_MAD Translocase of chloroplast 159/132, membrane anchor domain
Representative CDS sequence Show only first row Show all	>Lus10005063 pacid=23149015 polypeptide=Lus10005063 locus=Lus10005063.g ID=Lus10005063.BGIv1.0 annot-version=v1.0 ATGGAGAATGAAGCTGAGAGGGTTGTTGTTGATGATGTGCCGGGAGATAAATCCAATGTGGTGAATGGCGGTTTGGAGGAGGCGCTAGAGGAGAGAGTTG TGGCAGCTTCAGACGAGTCGAAGGAGGAGATTCTTGTGGAATCTAGTGGATTGACGGATACTGTGGAAGATGAGGCTGAAAAGGGGAAGCATGCATCGGT TGAGTCCGGGGAATCGAAGGAGGCAGTAGTGGAGGAGAGTGCTGGTGGAGTGAAGGAAACTGTGGAGGAGAATGATGAAGGGAAGGGTGATGTGGTCAAG TCCGGTGAATCGAAGGGTGTAGAAGAGGAAGTCTTCGAGGAGGCAGTTGATTCACCCGAGAAATTGCCGAGTCCGGTAGTATCAACTGAGTTGGGAGTTG ATCTTGATGTTGTTAATGATGCTAATGAGGATTTGGGCGCTGGAAGTGAAGTGGAAACATTTGTGGAGGCAGCTGGTGTCCTTTCACAGGATGAGAGTTC AGCTTCCATGGCTGTTGATGATGAGGTGGAATCGTCAATCGGCGGTGAGAACATTGACAAAACTAGTGATGGGGTGATTGGTGAGGACTCGGAAAAGGAT GGTGTCTTTGAACAGGCTGTGAGTTCAGAGGATTTGGCTTCAGTGGCTGTTGAAGAGAAGGTGGAAGTTCCGATGGGTGGTGAGAACATTGATAAAACTA GTGATGGGGTAACTGAACAGCTTGTGAGTTTAGAGGATTTGGTTCCAGTGGTTGAAGATAAGGTGGAAGTTCTGTTGGGTGGTGAGAGCATTGACAAAAT TGACGAGGGAGGGACTAGTAAGGAATTGGAAAGCAATGAGCCTGTCGGGGAAACCATTGTTTTCTCTGGGGCGTGTGTTAATGGAGGGCATGAGGAGTTG AATGGTGCAGCTGTGGTGGCTAGTTCTGACGATATTATGATTCTGCCTGCAGAAAGTGGGAAGAGGGAGAATGATAATGATCCATCTAAAGATTCCCTGG TTAGAGCGGAGTCTGAGAAGGTTACTATATTGGATGTGGTATGTAGGGATGAAGAATGTGGCGAGCTGAAGCATAACATTGCAATGGCTGATCCTGTGAA AGGAGTCAGTATCAGTGAGCATCTGGGGGACAATTTGATTGAGATGGTTGGAAAGCAAGAAGAGAGTAGCAACGGGGAACTGAAATTGACTGCATCCATA GAAAATCAGGAAGAAAGTTGTGAAGTGAAAGATATAGCAGTTGTTCTAGATACACCTGAACCTGAAGATGTATCTGGTTCAGTTGTTCTAGATACACCTG GACCTGAAGATGTATCTGGTTCAGTTGTTCTAGCCTCGCCTGTACTGGAAAAAGAAGCTGTTCCTCGTTCAGTTGTTCTTGATGCACCCCAGCTGGAAGA AGCAGCCCCACCTGCTTTGGCTGTTTTGGATGCGCCTGCCAATTTAAGCCCATCTTCTTCAGATAAGGAAGTTAGTCAACCCTCATCAAGTACTCCAAGT GCAGCAAACACAGAAGAACTTGTCGAGGAAAAGTGGAATGGTGGTGACATCAAAACTGTTATCGCTGAGGCATTGGGAGAGAAAGTGGAAGTTAAAGAGG TAGAAAACAAAACTGAAGATAAGCGGGAGGTAGAAGACAAAACTGAAGATAAGCGGGAGGTGGAAACTGCTCATTCAAATGGGGTTCATCGAGGTCGTGG AGTTGAGCTTCCACCAAGGGTTGCATCTACCTCTCAAAATATGACAAGTTCTGTTCCTCCACCTGCTCATCCAGCTGGTCTTGGCCGTGCTGCTCCTCTA CTGGAGCCTGCTCCGAGACCTGTGCAGCAACAGCAGCAGCGTGTTAATGGAACTATGTCCAATGCTCAGTCTCAGCAGATTGACGAGTCGAGTAATGGGG AAGGAGAGGAGTTTGACGAGACTCGTGAAAAACTCCAGATGATCAGGGTGAAGTTTTTGCGGCTTGCACATAGGCTTGGGCAGACACCTCATAACGTTGT GGTTGCTCAGGTTTTATACAGGCTGGGATTAGCCGAGCAGCTTCGGGGTAGAAATGGTGGCCGTGTTGGTGCCTTCAGTTTTGATCGGGCAAGTGCCATG GCAGAACAGCTCGAGGCAGTTGGCCAAGAACCCCTCGACTTCTCCTGTACAATTATGGTTATTGGAAAGTCCGGAGTTGGGAAAAGTGCAACTATCAACT CGATATTCGACGAGGTGAAGTTTAACACGGATGCTTTCCAATCCGGCACAAAAAAAGTTCAGGATGTCGTCGGCACGGTTCAAGGGATTAAGGTGAGGGT GATCGACACACCAGGGCTTCTACAGTCATGGTCCGAGCAGCGCCACAACGAAAAGATCTTAAATTCCGTCAAGCGCTTCATCAGCAAAACTCCTCCGGAC ATTGTGTTGTATCTTGACCGGCTGGACATGCAGACCAGGGATTCCGGCGACATGCCTCTATTACGCACCATCACAGATATATTCGGCCCCACGATATGGT TCAACGCCATCGTAGTCTTGACGCACGCCGCATCTGCTCCCCCAGAGGGTCCCAACGGTACTGTGTCGAGTTACGACATGTTTGTCACTCAGCGCTCTCA CATAGTCCAGCAGGCTATCCGTCAGGCTGCCGGCGATATGCGGCTGATGAACCCCGTTTCGTTAGTCGAGAACCATTCGGCTTGCAGAACAAATCGAGCC GGGCAGAGAGTGTTGCCCAACGGTCAGGTTTGGAAGCCTCACTTGTTGCTTCTCTCCTTTGCATCCAAGATTCTTGCCGAAGCAAACGCACTGTTGAAAT TACAAGATAGTCCTCCTGGGAAACCTCATACGCCTCGTTCGAGAGCGCCTCCTTTGCCTTTCCTGCTCTCGTCCCTTCTTCAGTCTAGGCCTCAGGTTAA GCTTCCGGAAGATCAGTACGGTGATGAAGATGGCGGGGATGATGATTTGGACGATTCATCTGATTCCGAGGATGAATCATCGGAATATGATGAGTTGCCT CCATTCAAGAGTTTGACTAGGAACCAGATGAGTAAGCTAACAAAAGCTCAGAGGAAGGCGTACCACGAGGAGTTGGAATACAGGGAAAAGCTTTTCATGA AGAAGCAATTGAAAGAAGAGAAAAGGCGAAGGAAGTTGATGAAGAAGATGGCTGCTGCTGCCAAAGATATGCCTGCTGTGTACAGAGATAACGCTGAAGA AGATGAAACTGGAGGCCCGGCTTCCGTCCCTGTTCCTATGCCCGACCTAGCATTGCCTGCTTCTTTTGATTCGGATAACCCCACTCACCGGTATCGTTCT CTTGATAACTCCAACCAATGGTTCGTGCGTCCTGTTCTCGATTCTCACGGCTGGGATCATGACATTGGTTACGATGGCATTAATGTTGAGAGACTGCTTG TAATCAAGGACAAATTCCCAGTATCCTTCTCAGGCCAGGTGACAAAGGACAAGAAAGATGCCAATGTCCAGATGGAATTAGCTAGCTCTCTAAAGCACGG ATCCGGGAAAGCAACTTCGATGGGGTTTGATATGCAGACGGTCGGAAAAGACTTGGCTTACACTATACGCGGCGAGACAATGCTAGCGAATTTCAAACGA AGCAAGGCTGCTGCCGGAGTGTCGGTTACTCTTCTCGGGGACGCGTTGTCAGCCGGTGCGAAATTTGAAGACAAGCTGGTGGTCAACAAACGGTTCCGGA TGGTTGTATCCGGCGGCGCAATGGCTGGCCGGGGAGACGTAGCTTATGGAGGCAGTTTGGAGGCGCAGTTGAGAGACAAAGACTACCCCTTGGGACGTTC TTTGTCGACTCTCGGGTTATCGGTCATGGATTGGCATGGTGACCTGGCGATAGGATGCAATGTCCAGTCGCAGATTCCGATTGGAAGGACGACAAACTTG ATTGCTCGTGCAAATTTGAATAACAGAGGTACGGGGCAGGTGAGCTTGCGGCTGAACAGTTCGGAGCAGCTTCAGATCGCGTTGGTCGGACTCTTGCCTC TGCTGCAGAAGCTTTTTTGGATTCCAAAACAGTTGCAGTATGGACAATGA
AA sequence Show only first row Show all	>Lus10005063 pacid=23149015 polypeptide=Lus10005063 locus=Lus10005063.g ID=Lus10005063.BGIv1.0 annot-version=v1.0 MENEAERVVVDDVPGDKSNVVNGGLEEALEERVVAASDESKEEILVESSGLTDTVEDEAEKGKHASVESGESKEAVVEESAGGVKETVEENDEGKGDVVK SGESKGVEEEVFEEAVDSPEKLPSPVVSTELGVDLDVVNDANEDLGAGSEVETFVEAAGVLSQDESSASMAVDDEVESSIGGENIDKTSDGVIGEDSEKD GVFEQAVSSEDLASVAVEEKVEVPMGGENIDKTSDGVTEQLVSLEDLVPVVEDKVEVLLGGESIDKIDEGGTSKELESNEPVGETIVFSGACVNGGHEEL NGAAVVASSDDIMILPAESGKRENDNDPSKDSLVRAESEKVTILDVVCRDEECGELKHNIAMADPVKGVSISEHLGDNLIEMVGKQEESSNGELKLTASI ENQEESCEVKDIAVVLDTPEPEDVSGSVVLDTPGPEDVSGSVVLASPVLEKEAVPRSVVLDAPQLEEAAPPALAVLDAPANLSPSSSDKEVSQPSSSTPS AANTEELVEEKWNGGDIKTVIAEALGEKVEVKEVENKTEDKREVEDKTEDKREVETAHSNGVHRGRGVELPPRVASTSQNMTSSVPPPAHPAGLGRAAPL LEPAPRPVQQQQQRVNGTMSNAQSQQIDESSNGEGEEFDETREKLQMIRVKFLRLAHRLGQTPHNVVVAQVLYRLGLAEQLRGRNGGRVGAFSFDRASAM AEQLEAVGQEPLDFSCTIMVIGKSGVGKSATINSIFDEVKFNTDAFQSGTKKVQDVVGTVQGIKVRVIDTPGLLQSWSEQRHNEKILNSVKRFISKTPPD IVLYLDRLDMQTRDSGDMPLLRTITDIFGPTIWFNAIVVLTHAASAPPEGPNGTVSSYDMFVTQRSHIVQQAIRQAAGDMRLMNPVSLVENHSACRTNRA GQRVLPNGQVWKPHLLLLSFASKILAEANALLKLQDSPPGKPHTPRSRAPPLPFLLSSLLQSRPQVKLPEDQYGDEDGGDDDLDDSSDSEDESSEYDELP PFKSLTRNQMSKLTKAQRKAYHEELEYREKLFMKKQLKEEKRRRKLMKKMAAAAKDMPAVYRDNAEEDETGGPASVPVPMPDLALPASFDSDNPTHRYRS LDNSNQWFVRPVLDSHGWDHDIGYDGINVERLLVIKDKFPVSFSGQVTKDKKDANVQMELASSLKHGSGKATSMGFDMQTVGKDLAYTIRGETMLANFKR SKAAAGVSVTLLGDALSAGAKFEDKLVVNKRFRMVVSGGAMAGRGDVAYGGSLEAQLRDKDYPLGRSLSTLGLSVMDWHGDLAIGCNVQSQIPIGRTTNL IARANLNNRGTGQVSLRLNSSEQLQIALVGLLPLLQKLFWIPKQLQYGQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16620		ATTOC120	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10005063 [exp]	0	1
AT3G16620		ATTOC120	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10027835 [exp]	1.0	0.9097
AT2G29190		APUM2	pumilio 2 (.1.2)		Lus10040782 [exp]	2.8	0.8374
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Lus10036594 [exp]	3.0	0.8540
AT1G36990			unknown protein		Lus10003744 [exp]	5.7	0.8244
AT1G07510		FTSH10	FTSH protease 10 (.1)		Lus10004973 [exp]	5.7	0.8349
AT1G73100		SDG19, SUVH3	SET DOMAIN PROTEIN 19, SU(VAR)...		Lus10008681 [exp]	6.0	0.8736
AT4G31160		DCAF1	DDB1-CUL4 associated factor 1 ...		Lus10006376 [exp]	6.9	0.8056
AT4G04950		AtGRXS17	Arabidopsis thaliana monothiol...		Lus10011188 [exp]	13.6	0.8431
AT2G20330			Transducin/WD40 repeat-like su...		Lus10022855 [exp]	16.6	0.7606
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Lus10019610 [exp]	17.3	0.7262

Compare expression of checked genes

Lus10005063 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.