Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21090 494 / 1e-171 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G04750 294 / 4e-93 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 287 / 9e-90 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 283 / 1e-87 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G25360 280 / 1e-86 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G14050 273 / 8e-86 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 276 / 9e-86 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G08510 268 / 6e-85 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G56310 267 / 3e-84 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G44230 269 / 1e-83 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027836 [exp] 330 / 5e-113 AT2G21090 234 / 5e-74 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10005987 [exp] 291 / 9e-94 AT5G08510 602 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018223 [exp] 285 / 7e-89 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028106 [exp] 283 / 4e-88 AT1G25360 916 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009269 [exp] 280 / 5e-88 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040680 [exp] 280 / 6e-87 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015898 [exp] 280 / 6e-87 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004987 [exp] 267 / 1e-84 AT3G46790 715 / 0.0 CHLORORESPIRATORY REDUCTION 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020918 [exp] 269 / 8e-84 AT2G29760 474 / 3e-159 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G027800 [exp] 301 / 1e-94 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G258766 [exp] 295 / 1e-94 AT1G06150 705 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.002G175900 [exp] 286 / 9e-92 AT5G08510 608 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G044700 [exp] 291 / 2e-91 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G086200 [exp] 285 / 3e-89 AT4G14820 840 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G012600 [exp] 283 / 6e-89 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G104700 [exp] 283 / 2e-88 AT2G13600 834 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G119000 [exp] 279 / 1e-87 AT5G44230 792 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G065500 [exp] 277 / 4e-87 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G053600 [exp] 277 / 6e-87 AT3G04750 759 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10005064 pacid=23149018 polypeptide=Lus10005064 locus=Lus10005064.g ID=Lus10005064.BGIv1.0 annot-version=v1.0 ATGGTGATCGGGTACGCCAAGGTCGGCCTGTGTGGTGAAGGTTTGAAATGTTATAAAGAGCTGAGGAAGGGTGGGATAGGGTACAATGAGTATACTTTTT CTGGTTTGATGATGATCTGTGTCAAGTATAGAGAAATTCGGTTGACAATGCAGGCTCATCGACACGTTTTGGGCGCGGGATTCTTGTCGAACGTAGTGAT ATCCTGCTCGATTCTCGATGCTTACTCGAAATGCGGCTGGATGGTGTTTGCCAGCAGGCTATTCGACGAGATGAGATCGAAGAACGTTCTGGCATGGACG ACAATGCTGTCTGGTTTTGCTCAGTGTGGGGATATGGAATCAGCTAACAAGGTCTTCAACACAATGCCTGTTAAAAATCCCGTCTCGTGGACGTCTTTAA TCGCTGGTTACGCTAGAAACGGGCGAGGTGTTAAGGCATTGGAGCTTTTCACTCGAATGATGGCGGTTCGAGTCACACCCGATCAGTTCACTTTCAGCAG TGTTCTCTGCGCTTGTGCTGGATTAGCTTCACTAAAGCATGGGAAATCGGTACACGGTCATTTGGTACGTATCGGTTTTAGTCCGAATACCATCGTTGTT ACCTCTTTGATTGATATGTACTCGAAATGTGGAAGCTTGGATGCTTGTCAGCTGGTTTTCGACGCCATGGATGTTAATAAAAATAAGAAAGATGTTGTTC TATGGAACACTATGCTTTCCACCTTGGCGCAACACGGTCGTGGGGAGGAGGCTATTCGATTTCTTGACGAGATGGTTCGTTTGGGGATAGTACCGAACAG GATAACATTGGTTATCGTGCTTAACGCGTGCAGTCATTCTGGTCTAGTAGAGGAAGGGGTTAAAGTTTTCGATTCCATGACGGGGGATCATGGCATTGTA CCGGATGAGGAGCATTACGCTTGCTTGATCGATCTCCTTGGACGAGCTGGAGATTTTGAGGAATTGGCGAACCAGCTCCAGATGCTGCCACCAAGTGAGA AGATTTGGAGCGCATTGCTCGGTGTTTGTAGCATCCATGGGAACATGGAGTTGGGGAAAATGGCAGCTGGACAGCTTATGAAGATGCAGCCTAGATCCCC TGCGGCGTATTTATTGCTGTTGAGTGTTTATGGTGTACTTGGGAGATGGGATTTGGTTGAGAAGGTTAGAGAAATCATGGAGAGAAGGGGGATTAGGAAA GAAGGGGGGGTTAGTTGGATAGAGAAAGGAACATCCATGGCGGCAGAAGAAGAAGAAGAAGCTGTGTGA
AA sequence Show only first row Show all	>Lus10005064 pacid=23149018 polypeptide=Lus10005064 locus=Lus10005064.g ID=Lus10005064.BGIv1.0 annot-version=v1.0 MVIGYAKVGLCGEGLKCYKELRKGGIGYNEYTFSGLMMICVKYREIRLTMQAHRHVLGAGFLSNVVISCSILDAYSKCGWMVFASRLFDEMRSKNVLAWT TMLSGFAQCGDMESANKVFNTMPVKNPVSWTSLIAGYARNGRGVKALELFTRMMAVRVTPDQFTFSSVLCACAGLASLKHGKSVHGHLVRIGFSPNTIVV TSLIDMYSKCGSLDACQLVFDAMDVNKNKKDVVLWNTMLSTLAQHGRGEEAIRFLDEMVRLGIVPNRITLVIVLNACSHSGLVEEGVKVFDSMTGDHGIV PDEEHYACLIDLLGRAGDFEELANQLQMLPPSEKIWSALLGVCSIHGNMELGKMAAGQLMKMQPRSPAAYLLLLSVYGVLGRWDLVEKVREIMERRGIRK EGGVSWIEKGTSMAAEEEEEAV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10005064 [exp]	0	1
AT4G27070		TSB2	tryptophan synthase beta-subun...		Lus10011154 [exp]	1.4	0.9497
AT1G31830			Amino acid permease family pro...		Lus10012153 [exp]	2.8	0.9193
AT5G43390			Uncharacterised conserved prot...		Lus10021875 [exp]	3.0	0.9209
AT3G47300		SELT	SELT-like protein precursor (....		Lus10001253 [exp]	3.7	0.9097
AT2G33410			RNA-binding (RRM/RBD/RNP motif...		Lus10032624 [exp]	4.0	0.9359
AT2G47550			Plant invertase/pectin methyle...		Lus10020680 [exp]	4.9	0.9138
AT3G13160			Tetratricopeptide repeat (TPR)...		Lus10007620 [exp]	7.3	0.9060
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031764 [exp]	8.1	0.8987
AT3G59840			unknown protein		Lus10030936 [exp]	9.2	0.8911
AT4G27070		TSB2	tryptophan synthase beta-subun...		Lus10043059 [exp]	9.5	0.9184

Compare expression of checked genes

Lus10005064 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.