Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34940 239 / 1e-76 ARO1 armadillo repeat only 1 (.1) AT4G36030 186 / 2e-56 ARO3 armadillo repeat only 3 (.1) AT5G66200 186 / 2e-56 ARO2 armadillo repeat only 2 (.1) AT3G26600 97 / 4e-24 ARO4 armadillo repeat only 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027838 [exp] 299 / 9e-105 AT4G34940 396 / 2e-135 armadillo repeat only 1 (.1) Lus10027837 [exp] 301 / 9e-103 AT4G34940 574 / 0.0 armadillo repeat only 1 (.1) Lus10025059 [exp] 275 / 7e-90 AT4G34940 973 / 0.0 armadillo repeat only 1 (.1) Lus10028452 [exp] 211 / 1e-65 AT5G66200 965 / 0.0 armadillo repeat only 2 (.1) Lus10034486 [exp] 195 / 1e-65 AT4G34940 163 / 2e-48 armadillo repeat only 1 (.1) Lus10041905 [exp] 210 / 3e-65 AT5G66200 966 / 0.0 armadillo repeat only 2 (.1) Lus10037087 [exp] 132 / 2e-39 AT5G66200 221 / 1e-68 armadillo repeat only 2 (.1) Lus10036897 [exp] 105 / 6e-27 AT5G66200 261 / 2e-79 armadillo repeat only 2 (.1) Lus10026695 [exp] 87 / 2e-20 AT3G26600 656 / 0.0 armadillo repeat only 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G172500 [exp] 249 / 2e-80 AT4G34940 1020 / 0.0 armadillo repeat only 1 (.1) Potri.009G131900 [exp] 246 / 4e-79 AT4G34940 986 / 0.0 armadillo repeat only 1 (.1) Potri.005G113000 [exp] 208 / 8e-65 AT5G66200 966 / 0.0 armadillo repeat only 2 (.1) Potri.015G082800 [exp] 102 / 3e-26 AT3G26600 610 / 0.0 armadillo repeat only 4 (.1) Potri.010G045500 [exp] 100 / 1e-25 AT3G26600 632 / 0.0 armadillo repeat only 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005065 pacid=23149016 polypeptide=Lus10005065 locus=Lus10005065.g ID=Lus10005065.BGIv1.0 annot-version=v1.0 ATGGGAAACCTAGCCAGAACGTTTCGAGCCACTGAGACTCGAATCGTGGGGCCCTTGGTCAAACTCCTGGACGAGAAGGAGGCAGATGTGATGATGGAAG CTGCGATTGCCCTGAACAAGTTTGCCTCGACCGAGAACTTCCTCTGTGTGAACCACTCGAAGGCGGTGCTCGCTGGCGGAGGGACCAAACACTTGATTCA ATTGGTCTACTTTGGGGAACAAGTGATCCAAATCCCTTCCCTAATACTCTTGTGTTACATCACCATGAATTGTCCTGATAGTGATGTTCTAGCCAATGAG GAAGTGTTGATTGTTTTGGAATGGTCAACAAAGCAAGCCCACTTGGTGGAGAACCAAACCATCCAAGAGTTGTTGCCTGAGGCCAAAGGTAGGTTGGAGC TTTATCAATCAAGAGGGTCAAGAGGGTTCCATTGA
AA sequence Show only first row Show all	>Lus10005065 pacid=23149016 polypeptide=Lus10005065 locus=Lus10005065.g ID=Lus10005065.BGIv1.0 annot-version=v1.0 MGNLARTFRATETRIVGPLVKLLDEKEADVMMEAAIALNKFASTENFLCVNHSKAVLAGGGTKHLIQLVYFGEQVIQIPSLILLCYITMNCPDSDVLANE EVLIVLEWSTKQAHLVENQTIQELLPEAKGRLELYQSRGSRGFH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34940		ARO1	armadillo repeat only 1 (.1)		Lus10005065 [exp]	0	1
					Lus10024617 [exp]	4.2	0.7270
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10002667 [exp]	14.2	0.6718
AT5G05340			Peroxidase superfamily protein...		Lus10000626 [exp]	50.1	0.6438
AT2G45120	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10031061 [exp]	61.7	0.6276
AT1G22590	MADS	AGL87	AGAMOUS-like 87 (.1.2)		Lus10023293 [exp]	75.9	0.6006
AT1G26380			FAD-binding Berberine family p...		Lus10021289 [exp]	97.9	0.6079
AT4G18335			unknown protein		Lus10028125 [exp]	127.4	0.5923
					Lus10030116 [exp]	146.7	0.5780
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10007046 [exp]	155.7	0.5739
AT3G25180		CYP82G1	cytochrome P450, family 82, su...		Lus10016287 [exp]	160.6	0.5801

Compare expression of checked genes

Lus10005065 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.