Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21060 108 / 4e-30 ATCSP4, ATGRP2B COLD SHOCK DOMAIN PROTEIN 4, glycine-rich protein 2B (.1) AT2G17870 98 / 3e-25 ATCSP3 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1) AT4G38680 95 / 8e-25 ATCSP2, CSDP2, GRP2 COLD SHOCK DOMAIN PROTEIN 2, ARABIDOPSIS THALIANA COLD SHOCK PROTEIN 2, glycine rich protein 2 (.1) AT4G36020 94 / 1e-23 CSDP1 cold shock domain protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027839 [exp] 158 / 3e-50 AT2G21060 110 / 6e-31 COLD SHOCK DOMAIN PROTEIN 4, glycine-rich protein 2B (.1) Lus10025058 [exp] 131 / 2e-40 AT2G21060 112 / 6e-33 COLD SHOCK DOMAIN PROTEIN 4, glycine-rich protein 2B (.1) Lus10034487 [exp] 101 / 1e-27 AT2G21060 110 / 7e-31 COLD SHOCK DOMAIN PROTEIN 4, glycine-rich protein 2B (.1) Lus10028073 [exp] 93 / 4e-24 AT4G36020 115 / 3e-31 cold shock domain protein 1 (.1) Lus10025623 [exp] 80 / 2e-19 ND 81 / 8e-20 Lus10041902 [exp] 72 / 8e-16 AT4G36020 159 / 2e-47 cold shock domain protein 1 (.1) Lus10028449 [exp] 72 / 1e-15 AT4G36020 158 / 3e-47 cold shock domain protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G132000 [exp] 120 / 8e-35 AT2G21060 103 / 1e-27 COLD SHOCK DOMAIN PROTEIN 4, glycine-rich protein 2B (.1) Potri.004G172600 [exp] 120 / 1e-34 AT2G21060 102 / 3e-27 COLD SHOCK DOMAIN PROTEIN 4, glycine-rich protein 2B (.1) Potri.005G174300 [exp] 96 / 4e-25 AT2G17870 92 / 1e-22 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1) Potri.002G086900 [exp] 91 / 3e-23 AT2G17870 89 / 2e-21 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1) Potri.005G112800 [exp] 74 / 2e-16 AT2G17870 86 / 1e-19 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1) Potri.007G057100 [exp] 69 / 9e-15 AT4G36020 127 / 3e-35 cold shock domain protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF00313 [flax] [poplar] CSD 'Cold-shock' DNA-binding domain CL0511 [flax] [poplar] Retroviral_zf PF00098 [flax] [poplar] zf-CCHC Zinc knuckle
Representative CDS sequence Show only first row Show all	>Lus10005066 pacid=23148994 polypeptide=Lus10005066 locus=Lus10005066.g ID=Lus10005066.BGIv1.0 annot-version=v1.0 ATGAGTGACAGACTATCGGGGAAGGTGAAGTGGTTCAATGACCAGAAGGGCTATGGCTTCATCACTCAGGATGACGGCGGCGAGGATCTCTTCGTTCACC AGTCCTCCATCCGCACCGAAGGCTTCCGCAGCCTAGCCGAGGGAGAAGAAGTCGAGTACCAGATCGAGAACTCCGATGACGGACGCACCAAGGCCGTCGA TGTCTCCGGGCCCAAAGGAGCTCCTGTTCAGGGCGGATCTGGCGGCGGAGGAGGCGGTAGAGGCGGCGGAGGTCGCGGATACGGAGGAGGCGGCTATTCA AGCGGCGGCTACGGAGGTGGCGGCGGATATGGAGGAGGTGGCGGTGGATACGGTGGCGGAGGAGGTGGATATGGTGGTGGTGGAAGAAGCGGGGGCGGTG GTAACGGGTGCTACAGCTGTGGCGAGTCTGGCCACATGGCTAGGGACTGCCCTACCGGAGGCGGCGGGATGGGTGTTTAA
AA sequence Show only first row Show all	>Lus10005066 pacid=23148994 polypeptide=Lus10005066 locus=Lus10005066.g ID=Lus10005066.BGIv1.0 annot-version=v1.0 MSDRLSGKVKWFNDQKGYGFITQDDGGEDLFVHQSSIRTEGFRSLAEGEEVEYQIENSDDGRTKAVDVSGPKGAPVQGGSGGGGGGRGGGGRGYGGGGYS SGGYGGGGGYGGGGGGYGGGGGGYGGGGRSGGGGNGCYSCGESGHMARDCPTGGGGMGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17870		ATCSP3	ARABIDOPSIS COLD SHOCK DOMAIN ...		Lus10005066 [exp]	0	1
AT2G21060		ATCSP4, ATGRP2B	COLD SHOCK DOMAIN PROTEIN 4, g...		Lus10027839 [exp]	1.0	0.9477
AT2G15000			unknown protein		Lus10025365 [exp]	4.7	0.8873
AT2G39020			Acyl-CoA N-acyltransferases (N...		Lus10040418 [exp]	4.7	0.9127
AT1G09520			unknown protein		Lus10005290 [exp]	4.9	0.8576
AT4G36020		CSDP1	cold shock domain protein 1 (....		Lus10041902 [exp]	4.9	0.9000
AT2G39020			Acyl-CoA N-acyltransferases (N...		Lus10023533 [exp]	5.7	0.9088
AT2G37400			Tetratricopeptide repeat (TPR)...		Lus10024433 [exp]	5.7	0.8899
AT4G22720			Actin-like ATPase superfamily ...		Lus10013054 [exp]	7.2	0.8294
AT5G42130		AtMfl1	MitoFerrinLike1, Mitochondrial...		Lus10029770 [exp]	7.7	0.9012
AT2G47110		UBQ6	ubiquitin 6 (.1.2)		Lus10030894 [exp]	8.9	0.8699

Compare expression of checked genes

Lus10005066 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.