Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17840 402 / 2e-137 ERD7 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) AT4G35985 381 / 2e-129 Senescence/dehydration-associated protein-related (.1) AT3G51250 362 / 7e-122 Senescence/dehydration-associated protein-related (.1) AT4G15450 150 / 4e-41 Senescence/dehydration-associated protein-related (.1) AT3G21600 136 / 4e-36 Senescence/dehydration-associated protein-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027840 [exp] 596 / 0 AT2G17840 489 / 4e-169 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Lus10014132 [exp] 438 / 5e-152 AT2G17840 476 / 1e-166 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Lus10028439 [exp] 352 / 8e-118 AT3G51250 520 / 0.0 Senescence/dehydration-associated protein-related (.1) Lus10034499 [exp] 257 / 5e-84 AT2G17840 306 / 2e-103 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Lus10041892 [exp] 208 / 2e-63 AT3G51250 358 / 9e-122 Senescence/dehydration-associated protein-related (.1) Lus10034498 [exp] 130 / 2e-36 AT3G51250 97 / 9e-25 Senescence/dehydration-associated protein-related (.1) Lus10043028 [exp] 135 / 2e-35 AT4G15450 373 / 3e-128 Senescence/dehydration-associated protein-related (.1) Lus10011127 [exp] 132 / 1e-34 AT4G15450 382 / 8e-132 Senescence/dehydration-associated protein-related (.1) Lus10012957 [exp] 122 / 3e-31 AT4G15450 321 / 1e-108 Senescence/dehydration-associated protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G174100 [exp] 472 / 4e-165 AT2G17840 472 / 7e-165 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Potri.009G133500 [exp] 424 / 7e-147 AT2G17840 449 / 1e-156 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Potri.005G111600 [exp] 385 / 9e-131 AT2G17840 491 / 3e-172 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Potri.018G087500 [exp] 148 / 2e-40 AT4G15450 401 / 5e-139 Senescence/dehydration-associated protein-related (.1) Potri.006G164748 [exp] 124 / 1e-31 AT4G15450 332 / 3e-112 Senescence/dehydration-associated protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06911 [flax] [poplar] Senescence Senescence-associated protein
Representative CDS sequence Show only first row Show all	>Lus10005067 pacid=23149008 polypeptide=Lus10005067 locus=Lus10005067.g ID=Lus10005067.BGIv1.0 annot-version=v1.0 ATGGAGTCTTCAAAGAAAACCTCCCTCTACCCAGAAATCGACCTCACAAACCCAGAAAAACCCAACTCCTCAACTTCCACTTCTTCTTCACCGTCCCTCT ACCCGACAGTCGACGTATCAGATCTCGCCGAGAAGCTATTTCCGGACGAGACCGACGCCGCCGCGGCCGAGTCGGCGGCGGCGGCCCCTCCTAACGAGGA GCTTCTGATCAGAATCCCGGGAGCCATAGTCCACCTGATCGAGAAAGACCGCAGCGTGGAGCTTGCCTGCGGGGATCTGGACATAGTCAGCTTCAAGCAA GGCGATACAGTCGTTGCGGCATTTTGTCGAATTGGTGGCGACATCCAGTGGCCGCTGGCCAAGGATGAAGCTGCTGTGAAGCTCGATCAGTCTCACTACT TCTTCACTCTTAGGGTTCCTTCCGGAAGCCAGGAATTTGGGGATTATGAAGAAGATGAGGTGAACGATCGATCCGAGGAGGAGGAGCTACTAAACTATGG AGTGACCTTTGCTTCAAAAGGGCAAGAGGCACTACTTCACGAATTCGACAAGGTGCTGGAGAGCTACAGCGCATTCACGGTGCAGGAAGTGTCCAACAAC GAAATCAAGGGATCGGAGATAATCGATGGGACTGTGGCGAGGGAGACTACGCCGGAGGAGTTCAGCAAAGAAGGGAAGAAGAAGGAGCTGATGAAGGAGA GTTCCGCGGCTTATTGGACCGTCCTGGCCCCGAACGTGGAGGACTACAGCAGCTCGTTGGCTAGGATGATTGCAGCCGGTTCGGGACACGTTATTAAGGG GATCCTTTGGTGTGGAGATGTCACTACTGAGAGGTTAAAGTGGGGGAATGATTTCTTCATTAGGAAGATGAAGAAAGGTGACTGTGTTGAGGTTCATCCT GGGACTCTGAGGAGGATCAAAAGGGTTAAGAAGCTGACGAAAATGTCCGAGAAAGTGGCTCTAGGAATCCTAACAGGGGTAGTCAAAGTGTCTGGTTGTG AACTCGAAAGTAGGGAAGAAGTTCTTCAGCCTCCTGCCTGGAGAAATCACAAGATTTGCGATGCTGTTGAAGTTGCTGGGAAGAATGTAATGTCCACCTC TTCAGTAGTCACAACTGGACTCGTCTCCCACAAGTACGGAGAACAAGCCGGGAAGGCGACTAACGAAGGGTTCGACGCAGCAGGACATGCGATCGGAACA GCGTGGGCAGTGTTCAAGATAAGGAAGGCTTTGAACCCAAAGAGTTCTTTCAAGCCATCAGCTCTGGCGAAAGCAGCCGCCAAGGCGAGCGCTGCTGATC TCAAGGCTAAATCCCCCAAGTGA
AA sequence Show only first row Show all	>Lus10005067 pacid=23149008 polypeptide=Lus10005067 locus=Lus10005067.g ID=Lus10005067.BGIv1.0 annot-version=v1.0 MESSKKTSLYPEIDLTNPEKPNSSTSTSSSPSLYPTVDVSDLAEKLFPDETDAAAAESAAAAPPNEELLIRIPGAIVHLIEKDRSVELACGDLDIVSFKQ GDTVVAAFCRIGGDIQWPLAKDEAAVKLDQSHYFFTLRVPSGSQEFGDYEEDEVNDRSEEEELLNYGVTFASKGQEALLHEFDKVLESYSAFTVQEVSNN EIKGSEIIDGTVARETTPEEFSKEGKKKELMKESSAAYWTVLAPNVEDYSSSLARMIAAGSGHVIKGILWCGDVTTERLKWGNDFFIRKMKKGDCVEVHP GTLRRIKRVKKLTKMSEKVALGILTGVVKVSGCELESREEVLQPPAWRNHKICDAVEVAGKNVMSTSSVVTTGLVSHKYGEQAGKATNEGFDAAGHAIGT AWAVFKIRKALNPKSSFKPSALAKAAAKASAADLKAKSPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17840		ERD7	EARLY-RESPONSIVE TO DEHYDRATIO...		Lus10005067 [exp]	0	1
AT5G51570			SPFH/Band 7/PHB domain-contain...		Lus10015032 [exp]	4.2	0.8622
AT2G46550			unknown protein		Lus10023163 [exp]	5.1	0.8475
AT1G48040			Protein phosphatase 2C family ...		Lus10037832 [exp]	5.5	0.8345
AT3G04470			Ankyrin repeat family protein ...		Lus10027960 [exp]	8.1	0.7908
AT2G25800			Protein of unknown function (D...		Lus10012969 [exp]	8.9	0.8181
AT1G74740		CDPK1A, CPK30, ...	CALCIUM-DEPENDENT PROTEIN KINA...		Lus10042185 [exp]	9.9	0.8438
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Lus10000513 [exp]	16.5	0.7911
AT2G43290		MSS3	multicopy suppressors of snf4 ...		Lus10027701 [exp]	16.6	0.8336
AT5G65500			U-box domain-containing protei...		Lus10035947 [exp]	17.5	0.8246
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10027337 [exp]	19.0	0.8197

Compare expression of checked genes

Lus10005067 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.