Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38600 2100 / 0 UPL3, KAK UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) AT5G02880 505 / 1e-151 UPL4 ubiquitin-protein ligase 4 (.1) AT1G70320 125 / 2e-28 UPL2 ubiquitin-protein ligase 2 (.1) AT1G55860 125 / 3e-28 UPL1 ubiquitin-protein ligase 1 (.1.2) AT3G17205 114 / 4e-25 UPL6 ubiquitin protein ligase 6 (.1.2.3) AT3G53090 96 / 1e-19 UPL7 ubiquitin-protein ligase 7 (.1.2) AT1G09270 67 / 7e-11 IMPA-4 importin alpha isoform 4 (.1.2.3) AT5G52000 47 / 0.0001 IMPA-8 importin alpha isoform 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027841 [exp] 2891 / 0 AT4G38600 2482 / 0.0 UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) Lus10019908 [exp] 609 / 0 AT4G38600 1545 / 0.0 UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) Lus10032589 [exp] 122 / 2e-27 AT1G55860 4402 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10032830 [exp] 117 / 1e-25 AT1G55860 1189 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10002605 [exp] 115 / 5e-25 AT1G55860 1128 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10035589 [exp] 88 / 6e-17 AT3G53090 1385 / 0.0 ubiquitin-protein ligase 7 (.1.2) Lus10017098 [exp] 71 / 1e-11 AT3G17205 1249 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Lus10037820 [exp] 69 / 4e-11 AT3G17205 1099 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Lus10008636 [exp] 61 / 9e-09 AT3G53090 1270 / 0.0 ubiquitin-protein ligase 7 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G134300 [exp] 2297 / 0 AT4G38600 2234 / 0.0 UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) Potri.004G174700 [exp] 2289 / 0 AT4G38600 2241 / 0.0 UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) Potri.016G085200 [exp] 595 / 0 AT5G02880 1634 / 0.0 ubiquitin-protein ligase 4 (.1) Potri.006G132000 [exp] 576 / 5e-177 AT5G02880 1614 / 0.0 ubiquitin-protein ligase 4 (.1) Potri.010G150000 [exp] 119 / 2e-26 AT3G17205 1506 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Potri.001G368600 [exp] 117 / 1e-25 AT1G55860 4297 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.008G101300 [exp] 115 / 1e-25 AT3G17205 1432 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Potri.011G094100 [exp] 115 / 4e-25 AT1G55860 4187 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.002G110500 [exp] 114 / 6e-25 AT1G55860 1125 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.016G096500 [exp] 94 / 9e-19 AT3G53090 1447 / 0.0 ubiquitin-protein ligase 7 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0552 [flax] [poplar] Hect PF00632 [flax] [poplar] HECT HECT-domain (ubiquitin-transferase)
Representative CDS sequence Show only first row Show all	>Lus10005068 pacid=23148986 polypeptide=Lus10005068 locus=Lus10005068.g ID=Lus10005068.BGIv1.0 annot-version=v1.0 ATGGCAGCTTCATCTTCGCACCAATCCGGTAGGTTGAAGAAGATTTTGTCTGGGTTGAGAGCTGATGGCGAGGAAGGGAAGCAAGTTGAGGCTTTGACTC AGCTTTGTGATATGCTGTCGATTGGAACGGAGGATTCTTTGAGTACTTTCTCGGTGGACTCTTTCGTTCCTGTTCTCGTTGGGTTGCTGAACCATGAGAG TAACCCTGATATTATGCTTCTCGCTGCTAGGGCGATCACACATTTGTGTGACGTGTTGCCTTCTTCCTGTGCTGCGGTTGTGCATTATGGTGCTGTTTCT TGTTTCGTTGCAAGATTGCTTACTATCGAGTATATGGACTTAGCTGAACAGTCCCTGCAAGCTTTAAAGAAGATATCCCAGGAGCACCCCACTGCCTGCC TGAGAGCTGGAGCTCTCATGGCTGTGCTTTCTTATTTGGATTTCTTTTCTACTGGGGTCCAGCGAGTGGCGTTGTCTACAGCTGCAAATATGTGCAAGAA ACTTCCTTCTGATGCTGCTGACTTTGTGATGGAAGCTGTCCCATTGCTCACAAATCTTCTTCAGTACCATGATGCAAAGGTTTTGGAGCATGCCTCGGTT TGTTTGACCCGTATTGCAGAAGCCTTTGCTTCATCATCCGAAAAGTTGGATGAATTGTGTAATCATGGACTGGTAACCCAAGCTGCAGCTCTCATTTCTC CTAGTAATTCTGGCGGTGGACAGGCATCTTTGAGCTCCCCTACGTATACAGGTTTAATTCGGTTGTTATCAACATTTGCAAGTGGGTCTCCTTTAGGTGC TAAAACTCTACTCCTTCTTGGAATCAGTAGCACTCTGAAAGATATATTGCTGGGTTCTGGTTCATCTGCTAATGCATCTGCTCCAGCTCTGAATAGGCCA GCTGAGCAGGTGTTTGAGATTGTTAACCTTGCAAATGAGCTTCTTCCCCCGCTGCCACATGGAACAATCTCTCTTCCTGTGAGCTCAAATACATTGGTGA AAGGGCCTCTTGTTAAGAAATCAAGCACCAGTGGTTCTGGAAAACATGATGAATTAGATGGAGATGCTGCTAAGATTTCAGCGAGGGAAAGATTGATAAC TGATCAACCAGAATTACTCCAGCAGTTTTCGTTGGACCTTCTTCCTGTTCTTATGCAGACTTATGGTTCTAGCGTGAACAGCGCTGTACGTCATAAATGC CTGTCAGCAATTGCAAAGTTAATGTACTTCAGCAGCGCAGAAATGATCCAGTCTCTGCTAAGCACAACAAACATTTCTAGTTTCCTAGCTGGTGTTTTTG CTATAGACCAGCTGATCTTAGCTGGCGGTCCAAGCACTCCAACTCCTGCTGCCCAGCAGTCTCCTGCTGAGAAAGAAAATGACTCTGCCTCTGGAGCGTC GTCGCGGTCTAGGCGCTACAAACGTCGCACTGGTAACTCGAATCTTGATGCAAGTTTGCCAGAGGAGTCAAAGGGCCTGGCTTCTGGTAATACTGGAACA TCTCTGAGCTCTGCTGAAATTCCATCTGTCAACTCCAGTTTGCGTGTGGCTGTTAGCACTTGTGCTAAAGCTTTCAAAGACAAGTACTTCCCTTCTGATC CCGGGGCAATGGATGTTGGGGTCACAGATGATCTTTTACATCTGAAAAATCTTTGCATGAAATTAAATGCCGGCGTGGAAGACCACAAAGTTAAAGGGAA AGGAAAATCTAAAGCTTCTGGATCCCATTATTTTGATACGTCCCCCGATAAAGAACAGTACTTGATCAGTGTGTTAACCAACTTGCTCGCAGAGCTAACC AAAGGGGATGGTGTGTCCACTTTTGAATTCATTGGGAGCGGCGTTGTAGCTGCCTTGCTTAACTACTTCTCTTGTGGTCATTTTTCGAAGGAGAGAATAT CTGATGCTAACCTCCCTAAGCTTCGGCAACAAGCACTAAGACGTTTCAAATCCTTCATTTCTGTTGCTCTCCCCTCTGATATTCAGGGTGGGAGTAACTC TCCTTTGAGTGTCTTGGTTCAGAAACTTCAAAATGCATTGACATCATTGGACCGTTTTCCAGTTGTTCTCAGCCATTCGTCTAGGTCAGCCGGTGGAAGT GCACGCCTATCTTCTGGGTTAAGTGCACTGACTCAGCCTTTCAAGTTACGCTTGTGTCGTGCCCAAGGGGAAAAATCACTTCGGGATTATTCTTCAAATA TTGTTCTTATTGACCCGTTAGCAAGTTTAGCATCTGTTGAAGCATTTCTCTGGCCTCGTGTTGATCGAGGTGAATCTGGTCAAAAGCCCTCACCTTCTGT TGGAAACTCAGGTTCTGGTACAACACCTGCCGGAGCTGGTGAATCATCTCCAACTACTTCTACACCTGCTTCAACCACACGCAGGCATTCTACAAGGTCA AAAGCAGCTGGTAGTTTAGGTGATCTTTCCAAGAAGGAACCAGTGCAGGAGAGAGCGACAAGTTCGTCGAAAGGGAAGGGTAAGGCTGTCTTAAAGTCTG CTCAGGATGAGGCCAAAGGACCCCAAACCAGAAATGCTACCCGCAGAAAAGGAGCTCTGGATAAAGATTCACTGATGAAATCAATGGACGGTGATTCTAG CTCTGAGGATGAGGAATTGGATATCTCTCCAGTTGAGATGGATGATGATTTGGTGATTGACGATGGTATGTCTGATGATGAAGATGATGAGCACGAAGAT GTGTTGGAAGATGATTCTCTTCCTGTCTGCATGCCTGAAAAAGTGCATGATGTACAATTGGGCGATGCCCCTGAGGACAACGTTGCTTCAGCATCAAATG ACAACCATTCTAATCCAGCTGCTGGTTCTAGTAGCAGCCGTGCTGCCGGCAGTAGGGGCACTGATTCTGCTGATTTAAGAGCTGGCATCTCCTATGGCTC TAGGGGTTCCATGTCCTTCGCTGCTGCTGCAATGGCTGGGCTTGGTTCTGCTGATGCTAGGGGCATCAGGGGAGCCAGAGATCGACAAGGGCGGCCCCTG TTTGGTGGTGCTAGTGATCCTCAGAGATTAATCTTCACTGCTGGTGGCAAGCAACTCAACAGGCATTTAACAATATATCAAGCCATTCAGCGACAGCTTG TACTGGATGAGGACGAGGATGATAGATACGCGAGCAGTGATTTTGTCTCGAGTGACGGAAGCAGACTTTGGAGTGATATATATACTATAACTTATTCAAG AGCTGAAAGCCAAAGCGATAAGGCCTCTGGTGCAGGGTCAAATACTACTCCTTCCAAGTCTGGAAAAGCTAGCTCCCCAGGTGCAAAATGTGATGCTCAA CTGCATCAAATGTCACTTTTGGATAGTATATTACAGGGCGAACTTCCATGTGACCTGGATAAGTCTAACCCTACGTATAATATACTAGCACTACTGCGGG TTATAGATGGATTAAACCAGCTTGCTTCTCGTTTGAGGGTGCAAGTCATTTCTGACAATTATGCACTGGGTAAAATCTCAACTTTGGATGAGCTTACTGC TACTGGTGCCAGGGTTCCTGCTGAAGAATTCATTAACAGTAAGCTCACCCCTAAATTAACTCGGCAAATGCAAGATGCCCTTGCTTTATGCAGTGGCAGT CTCCCATCATGGTGTTACCAGTTAACAAAAGCATGCCCATTTCTGTTCCCTTTTGAAACTCGTCGGCAGTACTTCTACTCAACTGCTTTTGGACTATCTC GGGCACTGTTTCGGCTTCAGCAGCAGCAAGGTGCTGAAGGAGGGGCATTCAATGAAAGAGAGGTTAGAGTTGGAAGGTTGCAGCGTCAAAAAGTTCGTGT TTCTCGGAACCGCATTCTGGATTCTGCTGCGAAAGTAATGGAGATGTATTCTAGTCAGAAAGCTGTGCTTGAAGTGGAATATTTCGGGGAAGTTGGTACT GGACTGGGTCCTACACTTGAGTTCTATACTCTATTGAGTCATGACTTGCAAAAGGCTTCGCTTGGAATGTGGAGGTCGAATATGTCATCTGATAAGCATC TAAATGAGGGCGATGCTGCTACTACAGGAAATGACAATCTTGTCCTTGCTCCACTCGGTTTGTTCCCTCGCCCATGGCCTCCGACTGCTGATGCTGCCGA GGGTAGTCAGCTCCTCAAGGTTGTCGAGTATTTCCGGCTTGTTGGACGCATTATGGCTAAAGCACTTCAGGACGGGCGACTTTTGGACTTGCCGCTCTCA ACAGCTTTTTATAAGATTGTGTTGGGTCAAGATCTCGATCTGTATGATATCCTTTCTTTTGATGCTGAACTTGGGAAGACACTGCAAGAATTGCATGCCC TTGTTGGTAGGAAGCAATATTTGGAGTCCTCAGGGTGCCATGATGCCGTCGCTGATTTACGGTTCCGTGGGGCTAATGTTGAAGATCTTTGCTTGGATTT TACTCTACCTGGCTATCCAGACTACACTTTGAAGACGGGGGATCAAACTGTTGATATCAATAACTTGGAAGATTATATATCGTTGGTAGTTGACGCTACT GTTAAGACTGGAATTACTCGTCAAATGGATGCATTTAGGTCAGGGTTCAATCAGGTATTCGATCTAGCATCGTTGCAAATCTTTTCTCCACTTGAACTCG ACAACTTGCTTTGTGGGCGTAGAGAGCTGTGGGAGGCCGAGACCCTGGTGGATCACATCAAATTCGATCACGGTTACACCGCCAAGAGCCCTGCAATTCT CAACTTGCTGGAGATTATGGGGGAGTTCACACCGGAGCAGCAGCGATCCTTCTGTCAGTTCGTCACCGGCGCACCTAGGCTTCCTCCCGGTGGTCTGGCT GTGTTGAATCCAAAGTTGACCATCGTTAGAAAGCATTCATCAACTGCATCCAATGCACCTTCCAACGGCACTGCGGCCCAAGAATCTGCAGACGATGACC TCCCTAGCGTCATGACCTGTGCCAACTATCTCAAGCTTCCTCCATACTCTACAAAGGTAACAGTCCCTGTCGTTTTCTCGCTTTATTTTCAACCGTCTAT CGCTGTTTCCACGTTCTCACTTTGTTCGAAACTATCCTCGGAACAGGAAATAATGTATAAGAAGCTAGTCTATGCGATCAGCGAAGGGCAAGGCTCGTTC GACTTGTCCTGA
AA sequence Show only first row Show all	>Lus10005068 pacid=23148986 polypeptide=Lus10005068 locus=Lus10005068.g ID=Lus10005068.BGIv1.0 annot-version=v1.0 MAASSSHQSGRLKKILSGLRADGEEGKQVEALTQLCDMLSIGTEDSLSTFSVDSFVPVLVGLLNHESNPDIMLLAARAITHLCDVLPSSCAAVVHYGAVS CFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASV CLTRIAEAFASSSEKLDELCNHGLVTQAAALISPSNSGGGQASLSSPTYTGLIRLLSTFASGSPLGAKTLLLLGISSTLKDILLGSGSSANASAPALNRP AEQVFEIVNLANELLPPLPHGTISLPVSSNTLVKGPLVKKSSTSGSGKHDELDGDAAKISARERLITDQPELLQQFSLDLLPVLMQTYGSSVNSAVRHKC LSAIAKLMYFSSAEMIQSLLSTTNISSFLAGVFAIDQLILAGGPSTPTPAAQQSPAEKENDSASGASSRSRRYKRRTGNSNLDASLPEESKGLASGNTGT SLSSAEIPSVNSSLRVAVSTCAKAFKDKYFPSDPGAMDVGVTDDLLHLKNLCMKLNAGVEDHKVKGKGKSKASGSHYFDTSPDKEQYLISVLTNLLAELT KGDGVSTFEFIGSGVVAALLNYFSCGHFSKERISDANLPKLRQQALRRFKSFISVALPSDIQGGSNSPLSVLVQKLQNALTSLDRFPVVLSHSSRSAGGS ARLSSGLSALTQPFKLRLCRAQGEKSLRDYSSNIVLIDPLASLASVEAFLWPRVDRGESGQKPSPSVGNSGSGTTPAGAGESSPTTSTPASTTRRHSTRS KAAGSLGDLSKKEPVQERATSSSKGKGKAVLKSAQDEAKGPQTRNATRRKGALDKDSLMKSMDGDSSSEDEELDISPVEMDDDLVIDDGMSDDEDDEHED VLEDDSLPVCMPEKVHDVQLGDAPEDNVASASNDNHSNPAAGSSSSRAAGSRGTDSADLRAGISYGSRGSMSFAAAAMAGLGSADARGIRGARDRQGRPL FGGASDPQRLIFTAGGKQLNRHLTIYQAIQRQLVLDEDEDDRYASSDFVSSDGSRLWSDIYTITYSRAESQSDKASGAGSNTTPSKSGKASSPGAKCDAQ LHQMSLLDSILQGELPCDLDKSNPTYNILALLRVIDGLNQLASRLRVQVISDNYALGKISTLDELTATGARVPAEEFINSKLTPKLTRQMQDALALCSGS LPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALFRLQQQQGAEGGAFNEREVRVGRLQRQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGT GLGPTLEFYTLLSHDLQKASLGMWRSNMSSDKHLNEGDAATTGNDNLVLAPLGLFPRPWPPTADAAEGSQLLKVVEYFRLVGRIMAKALQDGRLLDLPLS TAFYKIVLGQDLDLYDILSFDAELGKTLQELHALVGRKQYLESSGCHDAVADLRFRGANVEDLCLDFTLPGYPDYTLKTGDQTVDINNLEDYISLVVDAT VKTGITRQMDAFRSGFNQVFDLASLQIFSPLELDNLLCGRRELWEAETLVDHIKFDHGYTAKSPAILNLLEIMGEFTPEQQRSFCQFVTGAPRLPPGGLA VLNPKLTIVRKHSSTASNAPSNGTAAQESADDDLPSVMTCANYLKLPPYSTKVTVPVVFSLYFQPSIAVSTFSLCSKLSSEQEIMYKKLVYAISEGQGSF DLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38600		UPL3, KAK	UBIQUITIN-PROTEIN LIGASE 3, KA...		Lus10005068 [exp]	0	1
AT3G22380		TIC	time for coffee (.1.2)		Lus10002448 [exp]	2.2	0.9486
AT4G38600		UPL3, KAK	UBIQUITIN-PROTEIN LIGASE 3, KA...		Lus10027841 [exp]	2.4	0.9590
AT5G02310		PRT6, CER3	proteolysis 6 (.1)		Lus10025352 [exp]	4.1	0.9593
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Lus10002974 [exp]	6.5	0.9581
AT5G16280			Tetratricopeptide repeat (TPR)...		Lus10021264 [exp]	6.6	0.9326
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10029309 [exp]	10.0	0.9193
AT3G13530		MAPKKK7, MAP3KE...	MAP3K EPSILON PROTEIN KINASE, ...		Lus10010209 [exp]	11.5	0.9337
AT3G61690			nucleotidyltransferases (.1)		Lus10004018 [exp]	11.5	0.9407
AT4G15180		SDG2, ATXR3	SET domain protein 2 (.1)		Lus10039707 [exp]	12.0	0.9414
AT4G00450		CCT, CRP	CRYPTIC PRECOCIOUS, CENTER CIT...		Lus10036354 [exp]	12.5	0.9537

Compare expression of checked genes

Lus10005068 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.