Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35010 771 / 0 BGAL11 beta-galactosidase 11 (.1) AT2G16730 768 / 0 BGAL13 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) AT4G38590 726 / 0 BGAL14 beta-galactosidase 14 (.1.2) AT1G77410 604 / 0 BGAL16 beta-galactosidase 16 (.1) AT5G63800 551 / 0 MUM2, BGAL6 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) AT4G36360 550 / 0 BGAL3 beta-galactosidase 3 (.1.2) AT2G28470 535 / 2e-179 BGAL8 beta-galactosidase 8 (.1.2) AT3G13750 524 / 2e-175 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT2G32810 504 / 1e-167 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2) AT1G45130 482 / 2e-160 BGAL5 beta-galactosidase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027843 [exp] 1312 / 0 AT2G16730 949 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Lus10014126 [exp] 1050 / 0 AT2G16730 993 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Lus10019784 [exp] 816 / 0 AT2G16730 1052 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Lus10027844 [exp] 798 / 0 AT2G16730 1041 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Lus10005071 [exp] 793 / 0 AT2G16730 1050 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Lus10014125 [exp] 624 / 0 AT4G38590 897 / 0.0 beta-galactosidase 14 (.1.2) Lus10028538 [exp] 581 / 0 AT1G77410 967 / 0.0 beta-galactosidase 16 (.1) Lus10018138 [exp] 579 / 0 AT1G77410 928 / 0.0 beta-galactosidase 16 (.1) Lus10033427 [exp] 562 / 0 AT1G77410 1016 / 0.0 beta-galactosidase 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G174800 [exp] 871 / 0 AT2G16730 1115 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Potri.009G134400 [exp] 868 / 0 AT2G16730 1098 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Potri.002G080700 [exp] 621 / 0 AT1G77410 1115 / 0.0 beta-galactosidase 16 (.1) Potri.013G105100 [exp] 600 / 0 AT1G77410 1053 / 0.0 beta-galactosidase 16 (.1) Potri.005G180600 [exp] 594 / 0 AT1G77410 1051 / 0.0 beta-galactosidase 16 (.1) Potri.005G069200 [exp] 547 / 0 AT5G63800 962 / 0.0 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) Potri.007G018100 [exp] 543 / 0 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2) Potri.005G232600 [exp] 537 / 2e-180 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.009G012400 [exp] 525 / 1e-175 AT2G28470 1281 / 0.0 beta-galactosidase 8 (.1.2) Potri.007G099800 [exp] 520 / 1e-173 AT5G63810 1083 / 0.0 beta-galactosidase 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF01301 [flax] [poplar] Glyco_hydro_35 Glycosyl hydrolases family 35
Representative CDS sequence Show only first row Show all	>Lus10005070 pacid=23149009 polypeptide=Lus10005070 locus=Lus10005070.g ID=Lus10005070.BGIv1.0 annot-version=v1.0 ATGGCGATCATCAACTACAGAATAACCCTCTTCATGGCTTGCTCGATCGTTTTCTCGACGGCCGCTGTCGTTGCGACGGAGCACGGCGTCCGTTACGACG GCAGGTCGTTGATCATCAACGGCAAGAGGCAGCTTCTGTTCTCCGGCTCAATTCACTACCCTCGAAGCACCCCTGACATGTGGCCGGACTTGTTGGCGAA GGCGAAGCGCGGTGGGTTGAACGTGGTTCAGAGTTACGTGTTTTGGAATGTTCATGAGCCGGTTCAAGGGCAGTACAATTTTGAAGGTCGATACAACCTC GTGAAATTCATACGGATAATCGGGGCAATGGGGATGTACGCGACCATTCGAGTTGGACCATACGTGGAAGCGGAATGGAATCACGGAGGGTTTCCATTCT GGTTGAGGGAAGTAAAAAACATCACATTTCGTACCGATAATCCTCCTTTCAAGTACCACATGAGGAAATTCGTCAGGATGATAGTGGAAAAACTGAAAAA GGAAAATTTGTTTGCGTCACAAGGCGGTCCCATAATCATGTCACAGATCAATACTTGCAATGGAAGGCACTGTGCAAACACATTTCCTGGTCCAAACAAA CCCTACAAGCCTTCTCTATGGACAGAGAATTGGACTTCTCATTATACAGTTTTTGGAGGCCCTCCACACTATAGAAAACCAGAAGAGATAGCATTCTCAG TTGCTAGATGGTTTGCAAGGAATGGGACTCATGTCAACTATTACATGTACTATGGAGGGACAAACTTTGGGAGGACGACTTCGGCCTTCTCGACAACTCA ATATTACGACGAAGCCCCTCTCGACGAATATGGTATGGAGAGGGAGCCCAAAATGGGGCATTTGAGAGACCTACACAGAGCTTTGAAGCTTAGCCAAAAG GCTCTACTTTGGGGGAACCCTTTTGTTTGGAATCCTAGTAAGGATGTCGAGGTCTCCGTCTACAATCAACCAAAGACCGATGTCTGTGCCGCATTCCTGA CAAACAACAGTACCGATGTTGCAGCAACGGTCAAGTTCAGGGGACAAAAGTATCACCTGCCGCCATATTCTGTCAGCATTCTGCCAGATTGCAAAACTGT GGTCTACAACACCATGACAGTTGTGTCGCAGCACAACGCGAGGAGGTTCGTGAAATCGAGACTCGCTCGCTGGAATCTGAAATGGGAGATGTACAGAGAA GTGATTCCGAGCCAGCTGGGCCGCGGTTCGAGGAGGCCACTGGAGCTTTATAACTTGACCAAGGACACAACTGACTATGCTTGGTACACAACCAAGCAAG AGAGAGAAAAAACCGCGATACAAGTTAAAGAGCAAGATTTGGCTGTGAATGGGAGGCATCTGAAACTTACACTAGAAGTGGCAAGTTTAGGGCATGCAAT GGTTGCTTTTGTTAATGGAGACTTTGTTGGAGCTGCTCATGGAAGCCATGATAATAAGAGCTTTGTGCTGAAGGCACCGGTCGAGCTTAAACCTGGGTCG AATTCGGTCACACTGTTGGGCAGCCTAATGGGTCTCCCAAATAGCGGGGCGTATATGGAGCGAAGATATGCAGGGCCTCGCGGAGCTTCGATCGTTTGGG ATGCGGTCCGGGCCGATTCGATTGACTTACAATGGTTGGGGACATCAGGGTTGGATGGAGGGAATGCTCGAATTTACACTGAGGATGGATCGAGGAAGGT GAAGTGGACTGCGGTTGCGACAAGAAGTCGTGCTCTTACGTGCATAGGTAGATACTGGATGTCTTGCCTTTCTCCCATTGGACAACCTACTCAATCAGAG TATCACATCCCGCGTTCTTTCCTTAAACGGGGAAAGAACCTAATGGTTCTACTAGAAGAGGAGGGATCGAACCCGAAAAGGATTGAAATCTTGATGGTGA ACAGAGACATAATATGCAGCGACGTAGCAGAGAACCACTTCCCGACAGTGAATTCGTGGGCAAGGCAGCGTGGCAAGGTCGTGGTGGTAAAGGATAAGGT TCGACCAGAGGCTCAGTTAAGATGCCCCTTCCATAAAAAGATCGTCTCAGTAGAGTTTGCTAGCTTCGGAGATCCTCTGGGGGCATGTGGAAGTTATGCC AGAGGAGAATGCAGCTCCCCACAGGCATTGACAAAGTTGGTCTGTCGAAAAGTTCTGCATTGGGAAGAGTGGATGGGATATCCCCGTCAAAAGGAAGCTT TTCGAACGGGACCAGGAGCGTTGCCCACGAGTTTCAAAGAGATTAGTGGTTCAGGTTAA
AA sequence Show only first row Show all	>Lus10005070 pacid=23149009 polypeptide=Lus10005070 locus=Lus10005070.g ID=Lus10005070.BGIv1.0 annot-version=v1.0 MAIINYRITLFMACSIVFSTAAVVATEHGVRYDGRSLIINGKRQLLFSGSIHYPRSTPDMWPDLLAKAKRGGLNVVQSYVFWNVHEPVQGQYNFEGRYNL VKFIRIIGAMGMYATIRVGPYVEAEWNHGGFPFWLREVKNITFRTDNPPFKYHMRKFVRMIVEKLKKENLFASQGGPIIMSQINTCNGRHCANTFPGPNK PYKPSLWTENWTSHYTVFGGPPHYRKPEEIAFSVARWFARNGTHVNYYMYYGGTNFGRTTSAFSTTQYYDEAPLDEYGMEREPKMGHLRDLHRALKLSQK ALLWGNPFVWNPSKDVEVSVYNQPKTDVCAAFLTNNSTDVAATVKFRGQKYHLPPYSVSILPDCKTVVYNTMTVVSQHNARRFVKSRLARWNLKWEMYRE VIPSQLGRGSRRPLELYNLTKDTTDYAWYTTKQEREKTAIQVKEQDLAVNGRHLKLTLEVASLGHAMVAFVNGDFVGAAHGSHDNKSFVLKAPVELKPGS NSVTLLGSLMGLPNSGAYMERRYAGPRGASIVWDAVRADSIDLQWLGTSGLDGGNARIYTEDGSRKVKWTAVATRSRALTCIGRYWMSCLSPIGQPTQSE YHIPRSFLKRGKNLMVLLEEEGSNPKRIEILMVNRDIICSDVAENHFPTVNSWARQRGKVVVVKDKVRPEAQLRCPFHKKIVSVEFASFGDPLGACGSYA RGECSSPQALTKLVCRKVLHWEEWMGYPRQKEAFRTGPGALPTSFKEISGSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38590		BGAL14	beta-galactosidase 14 (.1.2)		Lus10005070 [exp]	0	1
AT3G26790	B3	FUS3	FUSCA 3, AP2/B3-like transcrip...		Lus10012573 [exp]	1.7	0.9841
AT5G09550			GDP dissociation inhibitor fam...		Lus10035634 [exp]	2.2	0.9782
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Lus10026697 [exp]	2.4	0.9814
AT2G03630			unknown protein		Lus10029645 [exp]	3.0	0.9809
					Lus10034143 [exp]	3.5	0.9809
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10014359 [exp]	9.5	0.9511
AT5G56510		APUM12	pumilio 12 (.1)		Lus10024793 [exp]	23.9	0.9166
					Lus10038209 [exp]	24.9	0.9556
					Lus10014474 [exp]	28.6	0.9026
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Lus10040256 [exp]	29.3	0.9502

Compare expression of checked genes

Lus10005070 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.