Plant FIBer expression Database

Lus10005071 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G16730 1048 / 0 BGAL13 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1)
AT4G35010 1043 / 0 BGAL11 beta-galactosidase 11 (.1)
AT4G38590 998 / 0 BGAL14 beta-galactosidase 14 (.1.2)
AT1G77410 786 / 0 BGAL16 beta-galactosidase 16 (.1)
AT4G36360 681 / 0 BGAL3 beta-galactosidase 3 (.1.2)
AT5G63800 679 / 0 MUM2, BGAL6 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1)
AT3G13750 674 / 0 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1)
AT2G28470 650 / 0 BGAL8 beta-galactosidase 8 (.1.2)
AT2G32810 637 / 0 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2)
AT5G63810 590 / 0 BGAL10 beta-galactosidase 10 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027844
[exp]
1670 / 0 AT2G16730 1041 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1)
Lus10019784
[exp]
1441 / 0 AT2G16730 1052 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1)
Lus10014125
[exp]
1201 / 0 AT4G38590 897 / 0.0 beta-galactosidase 14 (.1.2)
Lus10014126
[exp]
1035 / 0 AT2G16730 993 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1)
Lus10027843
[exp]
981 / 0 AT2G16730 949 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1)
Lus10005070
[exp]
790 / 0 AT4G38590 781 / 0.0 beta-galactosidase 14 (.1.2)
Lus10028538
[exp]
738 / 0 AT1G77410 967 / 0.0 beta-galactosidase 16 (.1)
Lus10033427
[exp]
736 / 0 AT1G77410 1016 / 0.0 beta-galactosidase 16 (.1)
Lus10018138
[exp]
713 / 0 AT1G77410 928 / 0.0 beta-galactosidase 16 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G134400
[exp]
1244 / 0 AT2G16730 1098 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1)
Potri.004G174800
[exp]
1242 / 0 AT2G16730 1115 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1)
Potri.002G080700
[exp]
789 / 0 AT1G77410 1115 / 0.0 beta-galactosidase 16 (.1)
Potri.013G105100
[exp]
761 / 0 AT1G77410 1053 / 0.0 beta-galactosidase 16 (.1)
Potri.005G180600
[exp]
753 / 0 AT1G77410 1051 / 0.0 beta-galactosidase 16 (.1)
Potri.005G232600
[exp]
687 / 0 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2)
Potri.007G018100
[exp]
686 / 0 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2)
Potri.005G069200
[exp]
672 / 0 AT5G63800 962 / 0.0 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1)
Potri.006G144500
[exp]
666 / 0 AT3G13750 1260 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1)
Potri.001G200400
[exp]
664 / 0 AT3G13750 1471 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02140 Gal_Lectin Galactose binding lectin domain
CL0058 Glyco_hydro_tim PF01301 Glyco_hydro_35 Glycosyl hydrolases family 35
Representative CDS sequence
>Lus10005071 pacid=23149003 polypeptide=Lus10005071 locus=Lus10005071.g ID=Lus10005071.BGIv1.0 annot-version=v1.0
ATGAGTGTACGTTTATCCAGCCGGAATACAGTGGCGGCCTCCGCCACCGCCTTCCTCGTCGTCGTCTTCTTCGTATTGTCGCCGGCAGTCGTTGTCAACG
CTCACGACGACAATAAAGAAGAGTTGAATGGTGCTACTTACGATGCAAGGTCTCTTATTATTCGTGGCAAAAGAGAGCTTCTTTTCTCTGGATCCATTCA
CTATCCTCGTAGTACCCCCGATATGTGGCCGAAACTTCTGGAAGATGCTAAAAGGGGAGGGATCAATGTTATCCAAACTTATACCTTCTGGAACATTCAC
GAACCCGACGAAGGCAAGTTTAATTTCAAAGGAAGATTTGATGTAATAAAATTCCTCAAGATGTGCGGAGACCATGGCTTATATGTAACCATTAGATTTG
GACCATTCATCCAAGGTGAATGGAATCATGGAGCACTTCCATATTGGTTGAGAGAGATTCCAAACATAATCTTCCGTTGTTACAATGAACCGTATATGCA
ACACATGGAGAGGTTCGTCACGATGATGGTCCAAAAGATGAAAGATGCGAAGTTGTTCGCGGGACAAGGAGGTCCCATCATCCTGGCTCAGATCGAAAAC
GAGTACAATACTGTACAACTAGCTTATAGAGAGTTGGGGGACAAGTATGTCCAGTGGGCTGGAAACTTTGCAGAGAGCCTCAACGTTGGTGTCCCTTGGG
TCATGTGCAAGCAAAGAGATGCCCCTGATCCCGTTATCAATGCTTGCAATGGAAGGCATTGTGGTGACACCTTTCCTGGCCCTAATAAGCCTAACAAGCC
TGCATTGTGGACAGAGAACTGGACTGCTCAGTTTAGAGTGTTTGGTGATCCGCCATCACAGAGATCAGCAGAGGATACTGCATTCGGTGTAGTTCGTTGG
TTTTCGAAGAACGGAAGTCTAGTCAATTACTACATGTACCATGGTGGAACTAACTTGGGCAGGACGGCTGCATCTTTCGTGACGACTCGATACTACGACG
AGGCTCCACTTGACGAATTTGGTCTTGATAGAGGCCCAAAGTATGGCCATCTTAAGGATGTGCACAAGGCACTAAATTTATGCAAGAGGGCTTTGCTATG
GGGTACTAGCACCACTTCTCAAAGGTTGAATCCCGATGTAGAGGTTCGAATCTACGAGACCCCTGGAACCGATGTATGCTCCGCTTTCTTGACCAACAAC
CACACCAGGAACACGCACACGGTCAAATTCAAGGGACATGACTACTACCTCCCCGCGAGGTCCATTAGCATTCTTCCCGATTGCAAGACTGTCGTGCTCA
ATACCGCAACAATTGTGGCACAACACAATTCAAGGAACTTCTATAGATCAGAGGTTACGAACAAGCTGTGTTGGAAGATGACCACAGAGACAATCCCATC
AGTCCTCAATGTCACATCTTCAACTCCAATGGAGCTGTACTTCTTGACTAAGGATAAAACAGACTATGCTTGGTACACTACCACGATTAACTTGGATCCA
AAAGACTTGTCAATGAAGAAAGACGTTCTTCCTGTCCTTAGGGTTGCAAGTCTTGGCCATGCCATGCTTGCCTTTGTAAATGGTGTTTTCATAGGGTCTG
CACATGGAAGCCAGATAGACAAGAGTTTCGTCCTCCAGAAGTCGATCGAGTTGAAGCCTGGGATCAACCACATTTCCCTCCTCGGAACCTTGATTGGACT
TCCTGATAGTGGAGCTTACATGGAGCACAGATTCGCGGGGCCTCGAGGTGTCTCGATTCTCGGGTTGAACACGGGAACGCTCGATCTATCGCTCAATGGA
TGGGGGCATCAGGTTGGTCTGGCTGGTGAGGCCAATGAGTGGTTCAATGAGGATGGGTCAAAGAAGGGGAAATGGTCAGATGTTCCCAAAGGTAGCAAAG
GATGCGCCCTCACATGGTACAAGACTAAGTTTGATGCTCCTGAAGGTGATGATCCAGTGGCAGTGAGCATGCATGGGATGATCAAGGGTATGATTTGGAT
TAATGGAGAGTGCATTGGGCGTTATTGGATGTCTTATGTCTCCCCTCTTGGAGATCCTACTCAAGTCGAGTACCATATCCCAAGATCATACCTGAAGCCA
GAAGACAACCTGATGGTGATCCTGGAGGAAGAACCAGCCAACCCAGCAAACATCACGATCCTGACAGTGAACCGAGACACGATCTGCAGCTACGTCTCCG
AGCTCAGCCCACCGAGTGTCCGACAATGGGAGAGGAAAGACGACAAGTTCAGACCGGTCGGCGAGGAAGTGAGGCTAGGAGCCCACTTGAGATGCCCCTT
CGGAAAGAAAATCGCCGTAGTCGACTTTGCCAGCTACGGCGACCCTTATGGTGCCTGCGGCGGGTTTGCCCTCGGGACCTGCAACTCCCCAGTATCCAAA
CAGGTCGTTGAACAGCATTGCTTGGGGAAAGATGTATGCGATGTGCCAATGGATAAGGGACAATTCGAGAAGAGTAGGGATCCTTGCCCTCAGGTGCACA
AGACTTTGGCAGTTCAAGTAACTTGCAAATAG
AA sequence
>Lus10005071 pacid=23149003 polypeptide=Lus10005071 locus=Lus10005071.g ID=Lus10005071.BGIv1.0 annot-version=v1.0
MSVRLSSRNTVAASATAFLVVVFFVLSPAVVVNAHDDNKEELNGATYDARSLIIRGKRELLFSGSIHYPRSTPDMWPKLLEDAKRGGINVIQTYTFWNIH
EPDEGKFNFKGRFDVIKFLKMCGDHGLYVTIRFGPFIQGEWNHGALPYWLREIPNIIFRCYNEPYMQHMERFVTMMVQKMKDAKLFAGQGGPIILAQIEN
EYNTVQLAYRELGDKYVQWAGNFAESLNVGVPWVMCKQRDAPDPVINACNGRHCGDTFPGPNKPNKPALWTENWTAQFRVFGDPPSQRSAEDTAFGVVRW
FSKNGSLVNYYMYHGGTNLGRTAASFVTTRYYDEAPLDEFGLDRGPKYGHLKDVHKALNLCKRALLWGTSTTSQRLNPDVEVRIYETPGTDVCSAFLTNN
HTRNTHTVKFKGHDYYLPARSISILPDCKTVVLNTATIVAQHNSRNFYRSEVTNKLCWKMTTETIPSVLNVTSSTPMELYFLTKDKTDYAWYTTTINLDP
KDLSMKKDVLPVLRVASLGHAMLAFVNGVFIGSAHGSQIDKSFVLQKSIELKPGINHISLLGTLIGLPDSGAYMEHRFAGPRGVSILGLNTGTLDLSLNG
WGHQVGLAGEANEWFNEDGSKKGKWSDVPKGSKGCALTWYKTKFDAPEGDDPVAVSMHGMIKGMIWINGECIGRYWMSYVSPLGDPTQVEYHIPRSYLKP
EDNLMVILEEEPANPANITILTVNRDTICSYVSELSPPSVRQWERKDDKFRPVGEEVRLGAHLRCPFGKKIAVVDFASYGDPYGACGGFALGTCNSPVSK
QVVEQHCLGKDVCDVPMDKGQFEKSRDPCPQVHKTLAVQVTCK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G16730 BGAL13 beta-galactosidase 13, glycosy... Lus10005071
[exp]
0 1

Lus10005071 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.