Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27960 291 / 1e-98 UBC9 ubiquitin conjugating enzyme 9 (.1.2) AT1G64230 291 / 2e-98 UBC28 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) AT5G41700 288 / 2e-97 ATUBC8, UBC8 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) AT5G53300 288 / 4e-97 UBC10 ubiquitin-conjugating enzyme 10 (.1.2.3.4) AT3G08690 281 / 3e-94 ATUBC11, UBC11 ubiquitin-conjugating enzyme 11 (.1.2) AT2G16740 280 / 5e-94 UBC29 ubiquitin-conjugating enzyme 29 (.1) AT5G56150 273 / 3e-91 UBC30 ubiquitin-conjugating enzyme 30 (.1.2) AT2G20980 264 / 3e-84 MCM10 minichromosome maintenance 10 (.1) AT3G08700 245 / 2e-80 UBC12 ubiquitin-conjugating enzyme 12 (.1) AT3G13550 162 / 6e-48 EMB144, COP10, CIN4, FUS9 FUSCA 9, EMBRYO DEFECTIVE 144, CONSTITUTIVE PHOTOMORPHOGENIC 10, CYTOKININ-INSENSITIVE 4, Ubiquitin-conjugating enzyme family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019785 [exp] 337 / 2e-112 AT2G20980 382 / 4e-131 minichromosome maintenance 10 (.1) Lus10014124 [exp] 321 / 3e-106 AT2G20980 378 / 1e-129 minichromosome maintenance 10 (.1) Lus10027846 [exp] 310 / 9e-106 AT1G64230 289 / 3e-102 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10014187 [exp] 289 / 1e-97 AT1G64230 303 / 7e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10022726 [exp] 289 / 1e-97 AT1G64230 303 / 7e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10032352 [exp] 288 / 3e-97 AT5G53300 302 / 2e-107 ubiquitin-conjugating enzyme 10 (.1.2.3.4) Lus10039323 [exp] 288 / 4e-97 AT1G64230 303 / 8e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10027570 [exp] 288 / 4e-97 AT1G64230 303 / 8e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10038827 [exp] 288 / 5e-97 AT1G64230 301 / 3e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G134500 [exp] 334 / 2e-111 AT2G20980 457 / 2e-160 minichromosome maintenance 10 (.1) Potri.004G175000 [exp] 297 / 1e-100 AT5G53300 292 / 2e-103 ubiquitin-conjugating enzyme 10 (.1.2.3.4) Potri.019G131400 [exp] 291 / 3e-98 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) Potri.016G138900 [exp] 290 / 6e-98 AT1G64230 304 / 3e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.006G110200 [exp] 289 / 1e-97 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) Potri.003G136200 [exp] 288 / 6e-97 AT1G64230 304 / 4e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.001G094900 [exp] 287 / 9e-97 AT1G64230 302 / 2e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.015G023300 [exp] 286 / 2e-96 AT5G53300 302 / 1e-107 ubiquitin-conjugating enzyme 10 (.1.2.3.4) Potri.012G033000 [exp] 286 / 2e-96 AT5G53300 302 / 1e-107 ubiquitin-conjugating enzyme 10 (.1.2.3.4) Potri.001G471200 [exp] 281 / 2e-94 AT1G64230 292 / 2e-103 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF00179 [flax] [poplar] UQ_con Ubiquitin-conjugating enzyme CL0208 [flax] [poplar] PF09329 [flax] [poplar] zf-primase Primase zinc finger
Representative CDS sequence Show only first row Show all	>Lus10005072 pacid=23149002 polypeptide=Lus10005072 locus=Lus10005072.g ID=Lus10005072.BGIv1.0 annot-version=v1.0 ATGTTAGTGACAGTTGATTACGATTTGGACGAGCTCGTCGAGAAGTCCGGGAAGCTGAACGGGTCGACGAAGAAATCCGGCGACGCGAATGTGGAGAAGT ACTCCGGTTTAAGAATTAGTAATCAACAACTCACCTCTGCCCAGCTTGCTGAACGCTTCTCAGACATCCGATTCATCCGATTGCCGATCATCAAGAATTT GTTGATCGGAGACAGCATTTCTGGGTGTTGGGCAACTGTTGGAGTGTTGACTGAGAAAGGTCAACCAAGAACAAGCTCAATTGGAAAAACCTTTAGCATA TGGAACTTCAGCTGCTTAGATGAAACCACAGTTCCAGTGTTCTTGTTTGGCAATGCCTACCAACTCAACCGCGAGGCGAAATCCGGAACCGTTTTCGCCT TGCTCAACTGTACTGTACGAAGAGACGACACGGGACCAGGTTTCTCTTTGAGTGTTTACTCTCCCAATAACATACTAAAGATGGGAACTTCTGCTGATTA TGGTGTTTGCAAAGGGAAAAGGAAAGATGGGTTGGCTTGTACCCTAGTAATAAACAAATACCATAATGTGAAAGCAGCTGAGAGATTTTGCACACTACGT ACTGAGCTGAAAGGAGGAAACTTAGGGACAGCCTTCAGGACTCATCTCAAATCGCGAGGTAGATACATTGCTGATCCTCTTGCTGACAAGACAGCCTTGA AAAAGACTGCAAAGTTGGTGTCTTTAGAAGGGCTCAGAAAGACATTGAGCAAATCTCAAGGCATGATAAGGAAACCATCTAAGAAGAGGCAAAGAGCCCA ACAGGACGATTCAAAGAGGAGAACTGGTAAGGGGGAAGAAGCTCTTGTGGACAAAGCCAAGCAAAGAACCGAGAAGATGGTTGAGTTGCAACTGGTCGAC TCAGATGAAGAGAGAATACTCAAGGAGCTGAGAGAGTTGCAGAGAGACCCTCCAACTTCTTGCAGTGCAGGTCCTGTGGCACAAGATATGTTCCATTGGC AAGCAACAATCATGGGTCCAAATGACAGTCCTTATTCTGGTGGTGTTTTCCTTGTATCCATCCATTTCCCACCCGATTACCCTTTCAAACCTCCCAAGGT GGCTTTCAGGACTAAGGTTTTCCATCCGAATGTAAACAGCAATGGAAACATCTGCCTTGACATACTCAAAGAGCAATGGAGCCCTGCCCTTACCATCTCC AAGGTATTGCTATCGATTTGCTCGTTGCTGACCGATCCGAACCCGGATGACCCGTTGGTGCCAGAGATAGCCCATATGTGCAAGAATGACAAGTTGAAGT ATGAAGCAACTGCTCGTACCTGGACCCAGAAATATGCCATGGGCTGA
AA sequence Show only first row Show all	>Lus10005072 pacid=23149002 polypeptide=Lus10005072 locus=Lus10005072.g ID=Lus10005072.BGIv1.0 annot-version=v1.0 MLVTVDYDLDELVEKSGKLNGSTKKSGDANVEKYSGLRISNQQLTSAQLAERFSDIRFIRLPIIKNLLIGDSISGCWATVGVLTEKGQPRTSSIGKTFSI WNFSCLDETTVPVFLFGNAYQLNREAKSGTVFALLNCTVRRDDTGPGFSLSVYSPNNILKMGTSADYGVCKGKRKDGLACTLVINKYHNVKAAERFCTLR TELKGGNLGTAFRTHLKSRGRYIADPLADKTALKKTAKLVSLEGLRKTLSKSQGMIRKPSKKRQRAQQDDSKRRTGKGEEALVDKAKQRTEKMVELQLVD SDEERILKELRELQRDPPTSCSAGPVAQDMFHWQATIMGPNDSPYSGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNVNSNGNICLDILKEQWSPALTIS KVLLSICSLLTDPNPDDPLVPEIAHMCKNDKLKYEATARTWTQKYAMG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27960		UBC9	ubiquitin conjugating enzyme 9...		Lus10005072 [exp]	0	1
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10027846 [exp]	1.4	0.9459
AT1G23530			unknown protein		Lus10030608 [exp]	4.4	0.9467
AT2G16600		ROC3	rotamase CYP 3 (.1.2)		Lus10017258 [exp]	4.7	0.9205
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10039864 [exp]	5.3	0.9417
AT1G53540			HSP20-like chaperones superfam...		Lus10017202 [exp]	5.7	0.9452
AT5G24620			Pathogenesis-related thaumatin...		Lus10015591 [exp]	6.0	0.9454
AT1G24764		ATMAP70-2	microtubule-associated protein...		Lus10000642 [exp]	7.1	0.9034
AT1G60360			RING/U-box superfamily protein...		Lus10022967 [exp]	8.9	0.9450
AT5G66900			Disease resistance protein (CC...		Lus10007359 [exp]	9.2	0.9293
AT5G67550			unknown protein		Lus10011544 [exp]	9.8	0.9417

Compare expression of checked genes

Lus10005072 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.