Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16770 235 / 2e-76 bZIP bZIP23 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT4G35040 232 / 3e-75 bZIP bZIP19 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT3G51960 110 / 1e-28 bZIP ATBZIP24 basic leucine zipper 24 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027847 [exp] 419 / 3e-148 AT2G16770 295 / 1e-100 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10014121 [exp] 263 / 7e-88 AT2G16770 265 / 8e-90 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10019788 [exp] 254 / 2e-84 AT2G16770 209 / 5e-68 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10016368 [exp] 103 / 9e-27 AT4G35040 135 / 5e-40 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G134900 [exp] 271 / 2e-90 AT4G35040 291 / 2e-99 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.004G175200 [exp] 270 / 6e-90 AT4G35040 267 / 6e-90 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.003G204400 [exp] 102 / 2e-25 AT2G16770 151 / 5e-45 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.001G020200 [exp] 89 / 4e-20 AT2G16770 120 / 9e-33 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF07716 [flax] [poplar] bZIP_2 Basic region leucine zipper
Representative CDS sequence Show only first row Show all	>Lus10005073 pacid=23148993 polypeptide=Lus10005073 locus=Lus10005073.g ID=Lus10005073.BGIv1.0 annot-version=v1.0 ATGGAGGACGGCGAGGTGGAATTCTCGAACCAGGAAGTGTTCTCGGCGGCAAACATGGCCGAATTCCCTAGCAGCGGATCGATGGACAGCTTCTTCGACG AATTGCTGAAGGACACTCACGCCTGCACCCACACGCACACCTGCAATCCGCCGGGTCCCGATTACTCCCACACTCATACTTGCTTCCACGTCCACACGAA GATAGTCTCGGCTTCGTCCGGCGGGAGCGACGGCGATGACGACGGTACGTCGGAGTCTGTAGGGAAGAAGCTCTCGTCCTCGAAGAAGCGGCCGTTGGGG AACAGGGAGGCGGTGAGGAAGTACAGGGAGAAGAAGAAGGCGAGGGCTGCTTCGTTGGAGGACGAGGTTGTGAAGCTGAGGGCGGTGAACCAGCAGCTGA TGAGGAGGTTGCAAGGGCAGGCTGCGTTGGAGGCGGAAGTTGCGAGGTTGAAGTGTTTGCTTGTGGATATTCGGGGGAGGATCGAAGGGGAGATTGGGTC TTTCCCTTATCAGAAACCCGTTGCTGCTGCGGCAGCTGCAAATTTGAACTTGAGTAACATGAATGGGGCGTATGTGATGAATCCTTGTGACATGCAGTGT AATGATCAAGCGTATTGCTTGCATCCTGGGATGGATGGGAAGAGCGGCGGCAGTGGAGGTGGTGCTGGGTTGAGTGGGAATGGGCAAGCGTATGGTGGTG GTGGTGGTGGTGGTGGTAGTGGTGGTGGTTGTGACTTTGAGAATCTTCAATGCATGATGAATGAGAGCTCCGGTGCTAAGGATTTCTCTGTTTGTGGAGT TGGGAATGGTGTTACAAATGGGATTTCTCCTGGCTCGAGCAAGAGGAAAGGAAGGATGATCATGTCCATGAAACTCTTTGCTATTGCTCATTTAGGATGT TCAAGCTTCCGGTTTGTAGTGGCTACGAGGTTGATCAGTATGTCTATTTACTGCTTTGTTGAAACACTTCCAGGTGTTATGGCTTCCGGGTGTCGATGA
AA sequence Show only first row Show all	>Lus10005073 pacid=23148993 polypeptide=Lus10005073 locus=Lus10005073.g ID=Lus10005073.BGIv1.0 annot-version=v1.0 MEDGEVEFSNQEVFSAANMAEFPSSGSMDSFFDELLKDTHACTHTHTCNPPGPDYSHTHTCFHVHTKIVSASSGGSDGDDDGTSESVGKKLSSSKKRPLG NREAVRKYREKKKARAASLEDEVVKLRAVNQQLMRRLQGQAALEAEVARLKCLLVDIRGRIEGEIGSFPYQKPVAAAAAANLNLSNMNGAYVMNPCDMQC NDQAYCLHPGMDGKSGGSGGGAGLSGNGQAYGGGGGGGGSGGGCDFENLQCMMNESSGAKDFSVCGVGNGVTNGISPGSSKRKGRMIMSMKLFAIAHLGC SSFRFVVATRLISMSIYCFVETLPGVMASGCR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35040	bZIP	bZIP19	Basic-leucine zipper (bZIP) tr...		Lus10005073 [exp]	0	1
AT2G16770	bZIP	bZIP23	Basic-leucine zipper (bZIP) tr...		Lus10027847 [exp]	1.0	0.9317
AT1G64700			unknown protein		Lus10017341 [exp]	1.4	0.9104
AT1G58170			Disease resistance-responsive ...		Lus10026176 [exp]	2.4	0.8722
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10015275 [exp]	3.0	0.9022
AT4G38220		AQI	aquaporin interactor, Peptidas...		Lus10026565 [exp]	4.5	0.8765
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Lus10039621 [exp]	5.3	0.8688
AT3G13110		SAT-M, SAT-A, S...	SERINE ACETYLTRANSFERASE 3, SE...		Lus10040503 [exp]	7.3	0.8507
AT3G18490			Eukaryotic aspartyl protease f...		Lus10042978 [exp]	8.1	0.8745
AT5G51550		EXL3	EXORDIUM like 3 (.1)		Lus10031709 [exp]	9.4	0.8522
AT2G31200		ADF6, ATADF6	actin depolymerizing factor 6 ...		Lus10022933 [exp]	12.0	0.8473

Compare expression of checked genes

Lus10005073 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.