Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35050 575 / 0 NFC3, MSI3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) AT2G16780 572 / 0 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) AT5G58230 456 / 2e-159 MSI1, MEE70, ATMSI1 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) AT2G19520 207 / 6e-62 ATMSI4, ACG1, NFC4, NFC04, FVE MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) AT4G29730 196 / 2e-57 MSI5, NFC5 nucleosome/chromatin assembly factor group C5 (.1) AT2G19540 124 / 2e-31 Transducin family protein / WD-40 repeat family protein (.1) AT1G29260 93 / 7e-21 PEX7, ATPEX7 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) AT5G67320 80 / 8e-16 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT1G20540 77 / 2e-15 Transducin/WD40 repeat-like superfamily protein (.1) AT2G32950 77 / 6e-15 FUS1, EMB168, DET340, ATCOP1, COP1 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027848 [exp] 762 / 0 AT4G35050 585 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10020916 [exp] 449 / 1e-156 AT5G58230 782 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10033460 [exp] 447 / 4e-156 AT5G58230 781 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10033459 [exp] 409 / 2e-141 AT5G58230 723 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10020917 [exp] 403 / 4e-139 AT5G58230 696 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10027632 [exp] 195 / 4e-57 AT2G19520 815 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Lus10011936 [exp] 157 / 4e-43 AT2G19520 577 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Lus10024403 [exp] 115 / 4e-28 AT2G19540 659 / 0.0 Transducin family protein / WD-40 repeat family protein (.1) Lus10025341 [exp] 113 / 5e-27 AT2G19540 668 / 0.0 Transducin family protein / WD-40 repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G135100 [exp] 645 / 0 AT2G16780 612 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.004G175300 [exp] 630 / 0 AT2G16780 593 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.014G179700 [exp] 451 / 8e-158 AT5G58230 790 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G216200 [exp] 449 / 5e-157 AT5G58230 784 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G151800 [exp] 204 / 2e-60 AT2G19520 814 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Potri.003G038800 [exp] 199 / 4e-59 AT2G19520 720 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Potri.018G068200 [exp] 197 / 4e-58 AT2G19520 812 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Potri.007G094000 [exp] 127 / 5e-32 AT2G19540 623 / 0.0 Transducin family protein / WD-40 repeat family protein (.1) Potri.005G074400 [exp] 124 / 4e-31 AT2G19540 631 / 0.0 Transducin family protein / WD-40 repeat family protein (.1) Potri.004G057600 [exp] 92 / 1e-20 AT1G29260 556 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] PF12265 [flax] [poplar] CAF1C_H4-bd Histone-binding protein RBBP4 or subunit C of CAF1 complex
Representative CDS sequence Show only first row Show all	>Lus10005074 pacid=23149010 polypeptide=Lus10005074 locus=Lus10005074.g ID=Lus10005074.BGIv1.0 annot-version=v1.0 ATGGCTGCAAAAGAGGAGCAGCAGAGCTCAGACCAGGTGGTGGAGGAAGAGTTCAGTGTGTGGAAAAAGAACACTCCATTTCTCTACGACTTGGTGATCT CCCACCCACTCGAATGGCCGTCTCTCACCGCTCACTGGGTTCCTCTCGAGGCTCCATCGCCTTACGCCGCTGACCCATCCTCCTTCGCCGTCCACAAGCT CGTCCTCGGAACCCACACCTCCGACGACTTCCCTAACTATCTGCTGATCGCCGATGCCGTCTTACCCACCCGCGACGCCGAAGTTAAAATCGAGGGAGGT CCTGAGAAAATCATTTTGCCTAAGGTGGACATAAGTCAGAAAATGCGTGTGGATGGGGAGGTCAACAGGGCCAGGTGTATGCCTCAGAATCCAGCCGTGA TCGGTGCTAAGACTAGCGGGAGTGAGGTTTACGTGTTCGATTCGAAGAACGAAGCTTTAAAGAAGGAAGATGTGTGTGACCCTGATTTGAGGTTGAGGGG TCATGATAAAGAAGGTTATGGACTGTCGTGGAGTCACATTAAGCAAGGCTATCTCGTGAGCGGTTCGAACGATTGCAAGGTCTGCTTGTGGGATATCGCT GCGGTGGCTCAGAATAAAGTGCTTGATGTATTGCACGTCTATGAGGGGCATGAAAGTGTGGTTGAGGATGTGGCTTGGCATTTGAAGAATGAGAACTTGT TTGGTTCAGTTGGGGATGATTGTCAACTGATGATTTGGGACCTCCGCACAAACCGAACTCAAGTTTCTGTCAAAGCTCATGAGAAAGAGATTAACTACCT ATCATTCAATCCATTCAACGAGAATATCCTGGCTACAGCATCTTCAGACTCTACTGTCGGCCTCTTCGACTTGCGAAAAATGGAAACACCTCTTCACGTC TTAAGCGGTCACACAGAAGAAGTGTTCCAAGTGGAATGGAACCCTAACCAAGAAACCGTGCTGGCATCGTCTGCCGACGATAGAAGGTTAAACGTCTGGG ACCTTAGCAGGATTGGGGAAGAACAGCTCGAACTCGACGCTGAGGATGGTCCTCCGGAGCTTCTCTTCTCCCATGGTGGACACAAGGCGAAGATTTCAGA TTTCTCGTGGAACAAGAACGAGCCATGGGTTATATCAAGTGTAGCAGAGGACAACTCCCTTCAAGTTTGGCAGATGGCTGAGAGCATATACAAGGATAAC GATGATGATAACAACATTGCAGGAATGGGTTAG
AA sequence Show only first row Show all	>Lus10005074 pacid=23149010 polypeptide=Lus10005074 locus=Lus10005074.g ID=Lus10005074.BGIv1.0 annot-version=v1.0 MAAKEEQQSSDQVVEEEFSVWKKNTPFLYDLVISHPLEWPSLTAHWVPLEAPSPYAADPSSFAVHKLVLGTHTSDDFPNYLLIADAVLPTRDAEVKIEGG PEKIILPKVDISQKMRVDGEVNRARCMPQNPAVIGAKTSGSEVYVFDSKNEALKKEDVCDPDLRLRGHDKEGYGLSWSHIKQGYLVSGSNDCKVCLWDIA AVAQNKVLDVLHVYEGHESVVEDVAWHLKNENLFGSVGDDCQLMIWDLRTNRTQVSVKAHEKEINYLSFNPFNENILATASSDSTVGLFDLRKMETPLHV LSGHTEEVFQVEWNPNQETVLASSADDRRLNVWDLSRIGEEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNEPWVISSVAEDNSLQVWQMAESIYKDN DDDNNIAGMG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35050		NFC3, MSI3	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10005074 [exp]	0	1
AT2G37020			Translin family protein (.1.2)		Lus10020710 [exp]	1.0	0.9374
AT4G16141	GATA		GATA type zinc finger transcri...		Lus10029863 [exp]	4.2	0.9217
AT1G78560			Sodium Bile acid symporter fam...		Lus10013700 [exp]	5.7	0.9199
AT3G25150			Nuclear transport factor 2 (NT...		Lus10022765 [exp]	6.0	0.9340
AT3G10070		TAF12, TAFII58	TATA-ASSOCIATED FACTOR II 58, ...		Lus10003250 [exp]	6.5	0.9120
AT1G09760		U2A'	U2 small nuclear ribonucleopro...		Lus10028659 [exp]	6.5	0.9313
AT1G16610		RNPS1, SR45	arginine/serine-rich 45 (.1.2....		Lus10002542 [exp]	7.7	0.9148
AT4G34412			unknown protein		Lus10014052 [exp]	8.7	0.8953
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Lus10004301 [exp]	8.9	0.9065
AT4G25730			FtsJ-like methyltransferase fa...		Lus10040439 [exp]	10.0	0.9233

Compare expression of checked genes

Lus10005074 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.