Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38970 644 / 0 ATBR6OX, CYP85A1, BR6OX1 brassinosteroid-6-oxidase 1 (.1.2.3) AT3G30180 635 / 0 CYP85A2, BR6OX2 brassinosteroid-6-oxidase 2 (.1) AT5G05690 295 / 8e-96 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT3G13730 282 / 3e-90 CYP90D1 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) AT5G45340 258 / 1e-81 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT1G12740 258 / 2e-81 CYP87A2 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) AT3G50660 257 / 2e-80 PSC1, CYP90B1, CLM, SNP2, DWF4, SAV1 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) AT4G19230 251 / 8e-79 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT4G36380 251 / 6e-78 ROT3 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) AT3G19270 244 / 8e-76 CYP707A4 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034377 [exp] 867 / 0 AT5G38970 648 / 0.0 brassinosteroid-6-oxidase 1 (.1.2.3) Lus10000647 [exp] 544 / 0 AT3G30180 540 / 0.0 brassinosteroid-6-oxidase 2 (.1) Lus10014240 [exp] 531 / 0 AT3G30180 531 / 0.0 brassinosteroid-6-oxidase 2 (.1) Lus10014850 [exp] 290 / 1e-93 AT5G05690 679 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10040193 [exp] 290 / 2e-93 AT5G05690 687 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10024495 [exp] 275 / 6e-88 AT1G12740 751 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10028345 [exp] 256 / 6e-80 AT4G36380 652 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Lus10003650 [exp] 249 / 6e-78 AT5G14400 353 / 3e-119 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1) Lus10041794 [exp] 249 / 1e-77 AT4G36380 643 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G117700 [exp] 747 / 0 AT5G38970 655 / 0.0 brassinosteroid-6-oxidase 1 (.1.2.3) Potri.017G099000 [exp] 746 / 0 AT3G30180 648 / 0.0 brassinosteroid-6-oxidase 2 (.1) Potri.010G156800 [exp] 578 / 0 AT3G30180 561 / 0.0 brassinosteroid-6-oxidase 2 (.1) Potri.008G067500 [exp] 308 / 1e-100 AT5G05690 710 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.010G189800 [exp] 307 / 3e-100 AT5G05690 717 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.001G200100 [exp] 288 / 2e-92 AT3G13730 663 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Potri.003G038200 [exp] 278 / 9e-89 AT3G13730 662 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Potri.003G122500 [exp] 274 / 2e-87 AT1G12740 770 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G109100 [exp] 273 / 3e-87 AT1G12740 770 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.007G026500 [exp] 272 / 2e-86 AT3G50660 757 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10005075 pacid=23171468 polypeptide=Lus10005075 locus=Lus10005075.g ID=Lus10005075.BGIv1.0 annot-version=v1.0 ATGGGTTGGCCCGTTTTTGGAGAAACCACCGATTTCCTTAAGCAAGGCCCCAACTTCATGAAGAACCAGAGAGCAAGGTATGGGAGTTTTTTCAAGTCCC ACATACTGGGTTGTCCAACAGTGGTGTCAATGGATCCAGAGGTTAACCGATACATACTGATGAATGAAGGGAAAGGGCTAGTTCCAGGTTACCCACAGTC GATGCTTGACATATTGGGGAAATGCAACATTGCAGCAGTTTATGGCTCTACCCACAAGTACATGAGAGGTGCTCTCCTTTCTCTCATCAGCCCCACCATG ATCAGACTCCACCTCTTGCCCACCATTGATAGCTTCATCAGATCCCACCTCTCCAATTGGGATTCCCAAATCATTGACATCCAACTCAAAACCAAAGAGA TGGCACTTCTATCATCACTTAAGCAGATAGCTGGGGCAGAATCAGGAACTTTCACTGAGGCATTCATGCCTGAGTTTTTCAAGCTGGTTTTAGGGACCTT GTCATTGCCAATAAACCTACCTGGAACCAGCTATCGACGAGGGGTTCAGGCTAGGAAGAGCGTTGTGGCTATGCTTAAGGAGCTGATAATGAAGAGGAGG AACTCCAAGGAATCCTGCAGTGACATGCTTGGTTCCCTCATGAACACTAGTGATGAGAATAGGTACAAGTTGAGTGATGATGAGATAATTGATCAGGTCA TTACTATCCTCTACTCTGGATATGAGACTGTCTCAACCACTTCAATGATGGCTGTCAAGTATCTCCATGACCATCCTAAAGCTCTTCAACTACTGAGAGA AGAGCATCTGGCAATTAGAGCAAAGAAGAAGCCAGAGGAGCCACTTGACTTTGATGACCTTAGGTCAATGCGTTTCACACGAGCGGTGATCTTTGAGACC TCAAGATTGGCTACAATAGTTAATGGGGTATTGAGGAAGACAACTCAAGAAATGGAAATTAATGGATTTGTGATACCAGAAGGGTGGAGAATCTATGTTT ACACAAGGGAGATGAACTATGATCCCTACTTTTATCCTGACCCATTGTCCTTCAACCCATGGAGATGGCTGGATAAAAGCTTGGAATCCAAGAACTATCA CTTCATTTTTGGAGGGGGTACTAGGCAGTGCCCTGGGAAGGAACTAGGAATAGCAGAAATTGCAACTTTTCTCCACTACTTTGTAACTAGATACAGATGG GAAGAAGTTGGAGGGGACAAACTAATGAAGTTTCCAAGAGTTGAAGCCCCCAATGGGCTGCATGTTAGGGTTTCTCATCTAAATAATTAG
AA sequence Show only first row Show all	>Lus10005075 pacid=23171468 polypeptide=Lus10005075 locus=Lus10005075.g ID=Lus10005075.BGIv1.0 annot-version=v1.0 MGWPVFGETTDFLKQGPNFMKNQRARYGSFFKSHILGCPTVVSMDPEVNRYILMNEGKGLVPGYPQSMLDILGKCNIAAVYGSTHKYMRGALLSLISPTM IRLHLLPTIDSFIRSHLSNWDSQIIDIQLKTKEMALLSSLKQIAGAESGTFTEAFMPEFFKLVLGTLSLPINLPGTSYRRGVQARKSVVAMLKELIMKRR NSKESCSDMLGSLMNTSDENRYKLSDDEIIDQVITILYSGYETVSTTSMMAVKYLHDHPKALQLLREEHLAIRAKKKPEEPLDFDDLRSMRFTRAVIFET SRLATIVNGVLRKTTQEMEINGFVIPEGWRIYVYTREMNYDPYFYPDPLSFNPWRWLDKSLESKNYHFIFGGGTRQCPGKELGIAEIATFLHYFVTRYRW EEVGGDKLMKFPRVEAPNGLHVRVSHLNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38970		ATBR6OX, CYP85A...	brassinosteroid-6-oxidase 1 (....		Lus10005075 [exp]	0	1
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Lus10013715 [exp]	7.3	0.8879
AT1G76190			SAUR-like auxin-responsive pro...		Lus10034570 [exp]	8.5	0.8702
AT3G28040			Leucine-rich receptor-like pro...		Lus10035687 [exp]	10.9	0.8865
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Lus10028582 [exp]	11.1	0.8794
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Lus10025829 [exp]	13.2	0.8834
AT2G41310		ARR8, ATRR3	RESPONSE REGULATOR 8, response...		Lus10007885 [exp]	16.3	0.8751
AT3G45100		SETH2	UDP-Glycosyltransferase superf...		Lus10024892 [exp]	18.1	0.8244
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Lus10008605 [exp]	21.9	0.8708
AT1G10850			Leucine-rich repeat protein ki...		Lus10029075 [exp]	32.0	0.8526
AT5G47520		AtRABA5a	RAB GTPase homolog A5A (.1)		Lus10039051 [exp]	35.9	0.7903

Compare expression of checked genes

Lus10005075 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.