Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31720 179 / 1e-58 STG1, TAFII15, TAF10 TBP-ASSOCIATED FACTOR 10, SALT TOLERANCE DURING GERMINATION 1, TBP-associated factor II 15 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034375 [exp] 229 / 4e-78 AT4G31720 199 / 5e-67 TBP-ASSOCIATED FACTOR 10, SALT TOLERANCE DURING GERMINATION 1, TBP-associated factor II 15 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G013300 [exp] 180 / 7e-59 AT4G31720 206 / 7e-70 TBP-ASSOCIATED FACTOR 10, SALT TOLERANCE DURING GERMINATION 1, TBP-associated factor II 15 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF03540 [flax] [poplar] TFIID_30kDa Transcription initiation factor TFIID 23-30kDa subunit
Representative CDS sequence Show only first row Show all	>Lus10005077 pacid=23171462 polypeptide=Lus10005077 locus=Lus10005077.g ID=Lus10005077.BGIv1.0 annot-version=v1.0 ATGAACCAGCAGCAGCAGCTCGGCGAGGGAAGAAAACACGACGATGACGCAGCTCTCACTGAGTTCCTCTCTTCATTAATGGATTACACACCCACTATTC CCGACGAATTGGTTGAGCATTTCCTGGGAAAAAGCGGGTTTCATTCTCCCGATGTTCGATTGATCAGGTTAGTAGCCGTTGCTACTCAGAAGTTCGTCTC CGAAGTTGCCAGTGATGCTCTGCATGTGACTCCAGTGTTTCTTACTAAGAATGTTTACCTCGCTCTCAAGTTTCCATTGGGGAGAGCTCATGTCTGTTTT TCTTTGGTTATGTGGCTTAGCTATAGCTTGATTCCCGCCAAACATTGCAAGGCCCGCCAGATAACAATAGTGAAGGATAAAAGAGATAAACAGCAAAAGG ATAAGCGACTCGTCTTGACTATGGAGGACCTGTCCAAAGCACTTCGTGAGTATGGTGTGAATGTGAAGCATCAGGAATACTTTGCTGATAGCCCTTCGAC TGGAATAGATCCTGCTTCACGGGAGGAGTAA
AA sequence Show only first row Show all	>Lus10005077 pacid=23171462 polypeptide=Lus10005077 locus=Lus10005077.g ID=Lus10005077.BGIv1.0 annot-version=v1.0 MNQQQQLGEGRKHDDDAALTEFLSSLMDYTPTIPDELVEHFLGKSGFHSPDVRLIRLVAVATQKFVSEVASDALHVTPVFLTKNVYLALKFPLGRAHVCF SLVMWLSYSLIPAKHCKARQITIVKDKRDKQQKDKRLVLTMEDLSKALREYGVNVKHQEYFADSPSTGIDPASREE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31720		STG1, TAFII15, ...	TBP-ASSOCIATED FACTOR 10, SALT...		Lus10005077 [exp]	0	1
AT1G22140			unknown protein		Lus10025627 [exp]	1.0	0.8955
AT5G47890			NADH-ubiquinone oxidoreductase...		Lus10030922 [exp]	3.2	0.8891
AT5G09225			unknown protein		Lus10020870 [exp]	3.6	0.8587
AT5G55140			ribosomal protein L30 family p...		Lus10031912 [exp]	3.9	0.8755
AT4G14965		ATMAPR4	membrane-associated progestero...		Lus10042022 [exp]	7.3	0.8741
AT5G64350		FKP12, ATFKBP12...	ARABIDOPSIS THALIANA FK506-BIN...		Lus10003760 [exp]	7.5	0.8468
AT4G14455		ATBS14B ,ATBET1...	ARABIDOPSIS THALIANA BET1P/SFT...		Lus10041158 [exp]	7.5	0.8211
AT1G64750		DSS1(I), ATDSS1...	deletion of SUV3 suppressor 1(...		Lus10030906 [exp]	7.5	0.8801
AT1G03330			Small nuclear ribonucleoprotei...		Lus10042686 [exp]	7.7	0.8861
AT2G02570			nucleic acid binding;RNA bindi...		Lus10007436 [exp]	9.4	0.8633

Compare expression of checked genes

Lus10005077 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.