Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69120 225 / 3e-73 MADS AGL7, AP1 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) AT1G26310 221 / 8e-72 MADS CAL1, AGL10, CAL CAULIFLOWER, AGAMOUS-like 10, K-box region and MADS-box transcription factor family protein (.1) AT5G60910 218 / 1e-70 MADS FUL, AGL8 FRUITFULL, AGAMOUS-like 8 (.1.2) AT3G30260 194 / 2e-61 MADS AGL79 AGAMOUS-like 79 (.1) AT5G15800 159 / 2e-47 MADS AGL2, SEP1 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) AT1G24260 159 / 2e-47 MADS AGL9, SEP3 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) AT2G45650 158 / 4e-47 MADS AGL6 AGAMOUS-like 6 (.1) AT2G03710 154 / 1e-46 MADS AGL3, SEP4 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3) AT3G02310 154 / 1e-45 MADS AGL4, SEP2 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) AT5G62165 150 / 1e-44 MADS FYF, AGL42 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034370 [exp] 365 / 6e-129 AT1G69120 224 / 1e-73 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10021140 [exp] 246 / 4e-81 AT5G60910 291 / 1e-99 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10007983 [exp] 245 / 4e-81 AT5G60910 298 / 3e-102 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10034662 [exp] 244 / 1e-80 AT5G60910 284 / 3e-97 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10017871 [exp] 236 / 1e-78 AT1G69120 264 / 2e-90 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10026679 [exp] 219 / 4e-71 AT1G69120 338 / 1e-118 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10004637 [exp] 218 / 5e-71 AT1G69120 318 / 2e-111 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10015765 [exp] 164 / 1e-49 AT1G24260 347 / 5e-122 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10003125 [exp] 159 / 1e-48 AT1G24260 290 / 9e-101 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G115400 [exp] 245 / 4e-81 AT5G60910 230 / 7e-76 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.017G099800 [exp] 238 / 2e-78 AT5G60910 255 / 7e-86 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.012G062300 [exp] 230 / 2e-75 AT5G60910 288 / 5e-99 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.010G154100 [exp] 227 / 3e-74 AT1G69120 324 / 7e-113 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Potri.008G098500 [exp] 221 / 4e-72 AT1G69120 336 / 9e-118 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Potri.008G098400 [exp] 166 / 2e-50 AT5G15800 275 / 2e-93 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Potri.014G074100 [exp] 164 / 1e-49 AT2G45650 311 / 5e-108 AGAMOUS-like 6 (.1) Potri.004G115500 [exp] 160 / 3e-48 AT3G02310 357 / 4e-126 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Potri.012G132600 [exp] 159 / 1e-47 AT2G45650 182 / 3e-57 AGAMOUS-like 6 (.1) Potri.001G058400 [exp] 158 / 3e-47 AT1G24260 362 / 8e-128 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01486 [flax] [poplar] K-box K-box region PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10005081 pacid=23171473 polypeptide=Lus10005081 locus=Lus10005081.g ID=Lus10005081.BGIv1.0 annot-version=v1.0 ATGGGGAGAGGAAGGGTAGAGATGAGGAGGATAGAGAACAAGATAAGCAGGCAAGTGACCTTCTCCAAGAGGAGAAGTGGTCTTTTGAAAAAAGCTCATG AGATCTCGGTTCTTTGTGATGCTCAGCTAGCCCTCATTGTTTTCTCCACTAAGGGCAAGCTCTTTGAGTACTCCTCTGATGATTCCAGCATGGACATGAT ACTGGAGAGATACGAGAGGTACTCGTATGCTGAAAGAAACCATGAGCTTCCCATTACCGATCCTCAACAACACCCGGGAAGTAGCTGGACTATGGAATGT CCAAAGCTCATGTCTAGGATTGAAGTGTTGCAGAGAAACCTCAGGAACTTGGTAGGAGAAGAAATTGATCCGATGAGTCTAAGGGAGCTTCAGCAGCTGG AGCAGCAAATTGATACTGCTCTTAAGAAAGTCAGATCAAGAAAGAACCAACTCTACCATGAATCCATCTCTAATCTCCAGAAAAAGGTGCAAGAACGTTC CTTGAACAAACAAAACGGCGTGCTAGCCAAAAAGGTGAAACAAAATGAGAAGGAAGTGGCAACAACTGGGAATGAAGAGCAGCAGCAGCAGCAGCAGAAC AATGAATATGAGAACGAGCCTCGTCGACTTGAGTCGCAACCAATGCTTCAACTTCCTCCTCTGACTATTGGGTGGGCTCTGTTGTGCAGTACATATGGGT TCCAAGCTAGAGGGCAAATGATGAATGCGAATGAGAACATTGAAGAAGAAGAAGAAGCTGTTGAAAGACAGGATCCGCCAACCAGAGTCGTCACTAAAAC TACTACCCATTTTCCAGCCTGGATGCTTCCGTATCTCCGTGATCAATAG
AA sequence Show only first row Show all	>Lus10005081 pacid=23171473 polypeptide=Lus10005081 locus=Lus10005081.g ID=Lus10005081.BGIv1.0 annot-version=v1.0 MGRGRVEMRRIENKISRQVTFSKRRSGLLKKAHEISVLCDAQLALIVFSTKGKLFEYSSDDSSMDMILERYERYSYAERNHELPITDPQQHPGSSWTMEC PKLMSRIEVLQRNLRNLVGEEIDPMSLRELQQLEQQIDTALKKVRSRKNQLYHESISNLQKKVQERSLNKQNGVLAKKVKQNEKEVATTGNEEQQQQQQN NEYENEPRRLESQPMLQLPPLTIGWALLCSTYGFQARGQMMNANENIEEEEEAVERQDPPTRVVTKTTTHFPAWMLPYLRDQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10005081 [exp]	0	1
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10034370 [exp]	6.3	0.9815
AT5G20240	MADS	PI, PISTILLATA	PISTILLATA, K-box region and M...		Lus10029719 [exp]	9.2	0.9808
AT2G32940		AGO6	ARGONAUTE 6, Argonaute family ...		Lus10015155 [exp]	11.5	0.9794
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Lus10015765 [exp]	13.4	0.9790
					Lus10014738 [exp]	13.6	0.8056
AT4G27570			UDP-Glycosyltransferase superf...		Lus10013368 [exp]	15.0	0.9790
AT3G06240			F-box family protein (.1)		Lus10014937 [exp]	16.4	0.9790
AT4G30770			Putative membrane lipoprotein ...		Lus10015689 [exp]	17.7	0.9790
AT1G29510		SAUR68	SMALL AUXIN UPREGULATED 68, SA...		Lus10007068 [exp]	18.6	0.7790
					Lus10011636 [exp]	19.0	0.9790

Compare expression of checked genes

Lus10005081 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.