Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38900 293 / 6e-102 Thioredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034369 [exp] 392 / 4e-141 AT5G38900 318 / 1e-111 Thioredoxin superfamily protein (.1) Lus10005083 [exp] 287 / 2e-99 AT5G38900 280 / 1e-96 Thioredoxin superfamily protein (.1) Lus10034368 [exp] 161 / 4e-49 AT5G38900 147 / 2e-43 Thioredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G100000 [exp] 340 / 6e-120 AT5G38900 329 / 2e-115 Thioredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF01323 [flax] [poplar] DSBA DSBA-like thioredoxin domain
Representative CDS sequence Show only first row Show all	>Lus10005082 pacid=23171480 polypeptide=Lus10005082 locus=Lus10005082.g ID=Lus10005082.BGIv1.0 annot-version=v1.0 ATGGCCGAGTCAGCTGGGAAGAAGCTTATCCGCATTGATGTCAGTTCAGACACCGTATGCCCGTGGTGCCTTGTTGGCAAGAAAAACTTGGATAGAGCCA TAGCTGCCTCTCAGGACACGTATGATTTTGAGGTCAGATGGCACCCGTATTTCCTGAACCCTTCTGCACCTACAGAAGGGATAAACAAGTTGCAATTTTA TAAGGAGAAGTTTGGATCTCGAGTCTTCAGAGGGCTTGGTCTGAACTATAACTTGGAAGGCCTCACGGGAAACACTCTAGACAGCCACAGGCTTATATAT TTTGTGGGCAAACAAGGTCTCGATAAACAGCATAATCTTGTGGAGGAGTTGTTCCTCGGCTACTTCACTCAGGCTAAATACATTGGAGACATAGAATTTC TACTGGAATGTGGTCAGAAAGTTGGAGTAGAGGGTGCAGCTGAGTTTCTTGATGATCCAAACAATGGGCTGCAAGAGGTGAATGAAGAGCTTGACAAATA CTCCTCACACATTAATGGTGTCCCTTACTACGTGCTAAATGGGAAGCTCAAGTTGAGCGGAGGACAGCCCCCCGAGACATTCCGGAGAGCTTTCGAGGCT GCTGGAAACCCATAG
AA sequence Show only first row Show all	>Lus10005082 pacid=23171480 polypeptide=Lus10005082 locus=Lus10005082.g ID=Lus10005082.BGIv1.0 annot-version=v1.0 MAESAGKKLIRIDVSSDTVCPWCLVGKKNLDRAIAASQDTYDFEVRWHPYFLNPSAPTEGINKLQFYKEKFGSRVFRGLGLNYNLEGLTGNTLDSHRLIY FVGKQGLDKQHNLVEELFLGYFTQAKYIGDIEFLLECGQKVGVEGAAEFLDDPNNGLQEVNEELDKYSSHINGVPYYVLNGKLKLSGGQPPETFRRAFEA AGNP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38900			Thioredoxin superfamily protei...		Lus10005082 [exp]	0	1
AT4G35770		ATSEN1, DIN1, S...	SENESCENCE ASSOCIATED GENE 1, ...		Lus10028390 [exp]	1.7	0.9535
AT4G35770		ATSEN1, DIN1, S...	SENESCENCE ASSOCIATED GENE 1, ...		Lus10041843 [exp]	5.7	0.9392
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10012536 [exp]	6.5	0.9404
AT3G50980		XERO1	dehydrin xero 1 (.1)		Lus10014280 [exp]	8.5	0.9020
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10028246 [exp]	11.6	0.9170
AT2G19900		ATNADP-ME1	Arabidopsis thaliana NADP-mali...		Lus10012964 [exp]	12.0	0.9264
AT3G53630			unknown protein		Lus10025312 [exp]	12.5	0.9126
					Lus10028391 [exp]	14.0	0.9028
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10004519 [exp]	16.5	0.8990
AT4G10265			Wound-responsive family protei...		Lus10018529 [exp]	26.4	0.9021

Compare expression of checked genes

Lus10005082 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.