Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38900 280 / 1e-96 Thioredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034369 [exp] 316 / 1e-110 AT5G38900 318 / 1e-111 Thioredoxin superfamily protein (.1) Lus10005082 [exp] 288 / 1e-99 AT5G38900 294 / 3e-102 Thioredoxin superfamily protein (.1) Lus10034368 [exp] 264 / 2e-89 AT5G38900 147 / 2e-43 Thioredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G100000 [exp] 328 / 7e-115 AT5G38900 329 / 2e-115 Thioredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF01323 [flax] [poplar] DSBA DSBA-like thioredoxin domain
Representative CDS sequence Show only first row Show all	>Lus10005083 pacid=23171485 polypeptide=Lus10005083 locus=Lus10005083.g ID=Lus10005083.BGIv1.0 annot-version=v1.0 ATGGCTGGGTCTATTAGTAACAGCTCGGGGAATAAGCTTATAAAGATCGATATCAGTTCGGACATGGTATGTCCATGGTGCTTTGTGGGGAAGAAAAATT TGGACAAAGCCTTAGCTGCCTCGAGTGACAGATTTGATTTCGAGATCAGATGGCATCCATTTCAACTGTATCCTGATGCCCCGAAGAAAGGAGTGAACTT ATTACAGTTCTACAGGGAAAGGTTCGGAGGCGGAATTGAGGGAATGATGGCTCGGATGTCTGAGACCTTCAGGAGCCTAGGCATGAACTATGATGTTTCG GGGCTAACGGGAAGTAGTATGGACGGGCATAGGCTTATGTACTTGGCGGGGAAACAAGGAGTTGATAAGCAGCACAAGCTTGCTGAGGAGCTGTTCCTTG GCAACTTCACACAGGCCAAATTCATTGGTGACAGGGGTTTCTTGCTGGAATGTGCCGAAAAGGTTGGATTGAAGGGAGCAGCCGAGTTTCTTGATAATCC AGATAATGGACTGAAAGAGGTAAATGAGGATCTGGAGAAATCAGTGATTAGAGGAGTTCCCCACTATCTGATTAATGGGAAGCACAAGTTGAGCGGAGCA CAGCCACCTGAAGTTTTCCTGAGAGCTTTTGAAGTTGCTGCCAAATCATAG
AA sequence Show only first row Show all	>Lus10005083 pacid=23171485 polypeptide=Lus10005083 locus=Lus10005083.g ID=Lus10005083.BGIv1.0 annot-version=v1.0 MAGSISNSSGNKLIKIDISSDMVCPWCFVGKKNLDKALAASSDRFDFEIRWHPFQLYPDAPKKGVNLLQFYRERFGGGIEGMMARMSETFRSLGMNYDVS GLTGSSMDGHRLMYLAGKQGVDKQHKLAEELFLGNFTQAKFIGDRGFLLECAEKVGLKGAAEFLDNPDNGLKEVNEDLEKSVIRGVPHYLINGKHKLSGA QPPEVFLRAFEVAAKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38900			Thioredoxin superfamily protei...		Lus10005083 [exp]	0	1
AT1G62990	HD	IXR11, KNAT7	KNOTTED-like homeobox of Arabi...		Lus10017824 [exp]	2.0	0.8610
AT5G51060		ATRBOHC, RHD2	ROOT HAIR DEFECTIVE 2, A. THAL...		Lus10016739 [exp]	2.0	0.8581
AT5G35460			unknown protein		Lus10017161 [exp]	4.2	0.8564
AT1G55760			BTB/POZ domain-containing prot...		Lus10008348 [exp]	5.9	0.8041
AT2G33990		IQD9	IQ-domain 9 (.1)		Lus10025425 [exp]	7.7	0.8217
AT5G38895			RING/U-box superfamily protein...		Lus10005084 [exp]	9.2	0.8384
AT3G22260			Cysteine proteinases superfami...		Lus10027312 [exp]	11.8	0.7967
AT1G62990	HD	IXR11, KNAT7	KNOTTED-like homeobox of Arabi...		Lus10001195 [exp]	12.2	0.8013
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Lus10019543 [exp]	14.2	0.7809
AT5G01520		AtAIRP2, AIRP2	ABA Insensitive RING Protein 2...		Lus10004821 [exp]	14.8	0.8344

Compare expression of checked genes

Lus10005083 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.