Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38880 995 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034366 [exp] 1353 / 0 AT5G38880 1121 / 0.0 unknown protein Lus10035251 [exp] 372 / 1e-122 AT5G38880 256 / 3e-78 unknown protein Lus10034622 [exp] 360 / 1e-115 AT5G38880 301 / 4e-93 unknown protein Lus10035250 [exp] 147 / 2e-41 AT5G38880 131 / 1e-36 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G100300 [exp] 1098 / 0 AT5G38880 1120 / 0.0 unknown protein Potri.004G114600 [exp] 1077 / 0 AT5G38880 1110 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005085 pacid=23171470 polypeptide=Lus10005085 locus=Lus10005085.g ID=Lus10005085.BGIv1.0 annot-version=v1.0 ATGCGGAGCTCGTCGAGTTCGATGGCCCAACCAGATGCCATACTGGAATGGCTTCACAAGGAGATGGGGTACAGGCCCCTGGGTCCTTACACTACTTCAA CCAACAAGTCGCAGCTTCCTTCCGTCGATGCGCTCCGGAAGATTTGTCGTGGCAACATGATTCCGGTTTGGAGTTTCTTGATCAATAGAGTGAAATCAGA GAAGACGGTGGAGAATATAAGGAAGAACATCACTGTACACGGTGTTGATGGTGGTGATGGTCGTCGCCATCGTGCTGAGCGTGGGAGTAAAGATGACGGA GGGCGGAGTAAAGGAGGCGGGAGGAGGAAGGAGAAGGCAGCTGGTGGGGAGGTATCCAGTGCGGCCGAGAGTAGGGATTCGGCTTTGCAAGAAAGGGAAT TGGCTGCGAAGGAGGTGGAGAGGTTGAGGAACATTGTTGGGCGGCAGAGGAAGGATCTCAAAGCTAGAATGTTGGAAGTCTCTAGGGAAGAGGCCGAGAG AAAGAGAATGATCGACGAACGTTCTAAAAACAGGCATAAGCAGGTGATGTTGGAATCCTATGATCAGCAGTGTGATGAAGCAGCAAAAATATTTGCTGAA TATCACAAGCGTCTTTGTTACTATGTTAATCAAGCCAGAGATGCTCAAAAGTCGAGTGCTGACTCTTTGACGGAAGTGTTTAGCACCACTAGTGCAAACA GTGAGAAGGAATCGGTTTATTCAACTGTTAAGGGTGCTAGATCTGCTGATGATGTCATTCTTATTGAAACAGCTCACGAGAGAAATATCAGAAAGGCATG TGAATATCTTGCAGCCCATATGATAGAGAGAATACGTGTATCTTTTCCTGCATATGAAGGAAGTGGTATTCATTCAAGTCCTCAACTAGAAGCTGCAAAA CTGGGTATCGATTTGGATGGGGAAGTACCTGATGAATTTCTAGAAATTGAGAAAATTGATGTCAGAGCTGATGCAGAAACTTTAAGATACAAGTTTGAGA ACAACAGAGTACTGGAGGCTTCTTCTCCTGATGTGAGCTCTCCACTACATTATCAACTGCATGGAAATGGAAAGATTGGAGCAGATATTCCTTCTGGAGG AACTCAATATCAGCTCCTCGAAAGACAGAAGGCTCATGTTCAGCAATTTCTGGCTACTGAAGATTCACTTAACAAAGCTGCAGAGGCTAGGGACTTGTCT CAGAAGCTTATACAGCGGTTGCATGGGAGTGGCAATTCAGTTTCTTCACATGCACTTAATGTTAGTGGTGCATCTAAAAACATGGACAGTATCCGTCATT TTGAGTTGGAGGTATGGGCCAAAGAAAGAGAGCTGGCAGGGTTGAGGGCAAGTTTGAACACACTGATGTCTGAAATTGAACGCTTGAATAAGCTTTGTGC GGAGAGGAAAGAAGCTGAAGATTCTTTGAGAAAGAAGTGGAAAAAGATTGAAGAGTTTGATGCACGGAGATCTGAACTCGAAACTCTTTACACTGCTCTA TTGAAGGCCAACCGGGATGCAGCGACATTTTGGAATCAGCAGCCGTTGGCTGCAAGGGAGTATGCATCAACTACTATAATCCCAGCATGCTCAGTTGTTC TGAGCATTGCAAACAATGCAAGAGATCTTATTGATAACGAGTTCAAGGCTTTCTCTAGGAGCCCTGATAATAGCCTATATATGCTGCCTTCTACACCACA GGCACTTTTGGAATCAATGGGATCAACAGGATCTACAGGCTCTGACGCTGCTGCTGCTGCTGAAAAGAATGCTGCTCTACTGACAGCAAGAGCTGGTGCT AGAGACCCATCAGCAATTCCATCCATATGCCGGATTTCTGCTGCTCTTCAATATCCTGCTGGTTTGGAGGGTTCAGATGCTGGTTTAGCATCAGTGTTGG AGTCCTTGGAGTTCTGTCTAAATCTACGTGGTTCAGAGGCTAGTATTCTGGAGGACTTGGCAAAAGCAATCAACATGGTTCACATACGGCAGAATCTTGT TGAAAGTGGCCATGCACTTTCGAACCATGCATATCATGCTCAACAAGAATATGAAAGGACTACAAACTATTGCCTGAGCTTAGCTTCCGAGCAGGAGAAG ATTGTGAAGGAGAAGTGGCTTCCTGAGCTTAAAGCTGCAAGTTTTGCTGCGGAAGAATGCCTGAATGGTTGCAAATATGTTAGGGAATTGCTTAATGAAT GGTGGGATCAACCAGCATCCACAGTGGTTGATTGGGTTTATGTTGACGGACAAGACGTTGCTACTTGGATTAATCACGTCAAGCAACTGCTTACATTGTC GTGA
AA sequence Show only first row Show all	>Lus10005085 pacid=23171470 polypeptide=Lus10005085 locus=Lus10005085.g ID=Lus10005085.BGIv1.0 annot-version=v1.0 MRSSSSSMAQPDAILEWLHKEMGYRPLGPYTTSTNKSQLPSVDALRKICRGNMIPVWSFLINRVKSEKTVENIRKNITVHGVDGGDGRRHRAERGSKDDG GRSKGGGRRKEKAAGGEVSSAAESRDSALQERELAAKEVERLRNIVGRQRKDLKARMLEVSREEAERKRMIDERSKNRHKQVMLESYDQQCDEAAKIFAE YHKRLCYYVNQARDAQKSSADSLTEVFSTTSANSEKESVYSTVKGARSADDVILIETAHERNIRKACEYLAAHMIERIRVSFPAYEGSGIHSSPQLEAAK LGIDLDGEVPDEFLEIEKIDVRADAETLRYKFENNRVLEASSPDVSSPLHYQLHGNGKIGADIPSGGTQYQLLERQKAHVQQFLATEDSLNKAAEARDLS QKLIQRLHGSGNSVSSHALNVSGASKNMDSIRHFELEVWAKERELAGLRASLNTLMSEIERLNKLCAERKEAEDSLRKKWKKIEEFDARRSELETLYTAL LKANRDAATFWNQQPLAAREYASTTIIPACSVVLSIANNARDLIDNEFKAFSRSPDNSLYMLPSTPQALLESMGSTGSTGSDAAAAAEKNAALLTARAGA RDPSAIPSICRISAALQYPAGLEGSDAGLASVLESLEFCLNLRGSEASILEDLAKAINMVHIRQNLVESGHALSNHAYHAQQEYERTTNYCLSLASEQEK IVKEKWLPELKAASFAAEECLNGCKYVRELLNEWWDQPASTVVDWVYVDGQDVATWINHVKQLLTLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38880			unknown protein		Lus10005085 [exp]	0	1
AT4G34450			coatomer gamma-2 subunit, puta...		Lus10026336 [exp]	3.5	0.9153
AT5G13390		NEF1	no exine formation 1 (.1)		Lus10002568 [exp]	4.2	0.8862
AT5G04060			S-adenosyl-L-methionine-depend...		Lus10027266 [exp]	4.7	0.9051
AT5G13390		NEF1	no exine formation 1 (.1)		Lus10001797 [exp]	4.9	0.8977
AT4G25240		SKS1	SKU5 similar 1 (.1)		Lus10031722 [exp]	5.1	0.8701
AT2G38650		GAUT7, LGT7	LIKE GLYCOSYL TRANSFERASE 7, g...		Lus10003235 [exp]	5.3	0.8888
AT5G51430		EYE	EMBRYO YELLOW, conserved oligo...		Lus10031731 [exp]	5.5	0.8880
AT1G24764		ATMAP70-2	microtubule-associated protein...		Lus10013238 [exp]	12.7	0.8745
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Lus10031497 [exp]	14.2	0.8860
AT1G56340		AtCRT1a, CRT1	calreticulin 1a (.1.2)		Lus10031410 [exp]	14.5	0.8482

Compare expression of checked genes

Lus10005085 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.