Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15780 135 / 6e-36 Pollen Ole e 1 allergen and extensin family protein (.1) AT4G08685 49 / 5e-07 SAH7 Pollen Ole e 1 allergen and extensin family protein (.1) AT1G29140 46 / 9e-06 Pollen Ole e 1 allergen and extensin family protein (.1) AT5G13140 46 / 2e-05 Pollen Ole e 1 allergen and extensin family protein (.1) AT5G45880 42 / 0.0001 Pollen Ole e 1 allergen and extensin family protein (.1) AT1G78040 42 / 0.0002 Pollen Ole e 1 allergen and extensin family protein (.1.2) AT5G10130 41 / 0.0003 Pollen Ole e 1 allergen and extensin family protein (.1) AT3G09925 41 / 0.0004 Pollen Ole e 1 allergen and extensin family protein (.1) AT4G18596 40 / 0.001 Pollen Ole e 1 allergen and extensin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034365 [exp] 330 / 1e-111 AT5G15780 129 / 7e-34 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10035252 [exp] 93 / 1e-21 ND 38 / 0.005 Lus10041707 [exp] 51 / 2e-07 AT5G10130 150 / 9e-47 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10009837 [exp] 50 / 5e-07 AT5G05500 171 / 1e-54 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10035187 [exp] 49 / 1e-06 AT5G41050 159 / 3e-50 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10040948 [exp] 49 / 1e-06 AT5G05500 176 / 9e-57 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10026040 [exp] 48 / 2e-06 AT5G10130 159 / 3e-50 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10014332 [exp] 47 / 5e-06 AT5G10130 154 / 2e-48 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10032018 [exp] 47 / 5e-06 AT5G41050 162 / 2e-51 Pollen Ole e 1 allergen and extensin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G114300 [exp] 154 / 2e-43 AT5G15780 178 / 5e-52 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.017G100600 [exp] 145 / 1e-39 AT5G15780 173 / 1e-49 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.003G167100 [exp] 59 / 2e-09 AT5G13140 180 / 2e-55 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.001G326200 [exp] 52 / 7e-08 AT5G41050 158 / 9e-50 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.017G068400 [exp] 50 / 3e-07 AT5G41050 172 / 3e-55 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.005G078200 [exp] 47 / 4e-06 AT4G08685 165 / 5e-53 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.001G060500 [exp] 47 / 7e-06 AT5G13140 185 / 3e-57 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.010G185400 [exp] 46 / 1e-05 AT5G05500 166 / 8e-53 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.006G005600 [exp] 45 / 2e-05 AT5G47635 120 / 8e-35 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.007G090100 [exp] 45 / 2e-05 AT4G08685 152 / 1e-47 Pollen Ole e 1 allergen and extensin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0287 [flax] [poplar] Transthyretin PF01190 [flax] [poplar] Pollen_Ole_e_1 Pollen protein Ole e 1 like
Representative CDS sequence Show only first row Show all	>Lus10005086 pacid=23171466 polypeptide=Lus10005086 locus=Lus10005086.g ID=Lus10005086.BGIv1.0 annot-version=v1.0 ATGGGTTGCTTCTCCATATTCGCAGTCCTCTATCTTCTAAGCTTCACCTTCACAGAAGCAAAGCACGAAGCTACTGCTGCGAACAAGAACGATGCAGCTA TCGTTGTTGGAACCGTCTACTGTGACACCTGCTTCCATGATGCGGACACCCGCTTCATTTCTGGAGCATCTGTTGCAGTGGAATGCAGACGCGGAAGATT CCGACAAGAAGTGAAGACAAACGAGCAAGGGAAGTTCAAGGTGAAGTTACCATTCTCAGTGAACAAACAAGTCCAAAGCATCAGGAGATGTTCAGTGAAA TTAGTGAGCAGCAGCGATCCCTCCTGTGCAGTTGCATCCACAGCGAATTCGACATCATCTTTCCATCGCATCAAGAACAATCAAGGAGACAATCTCCATG TCTTCTCTGCTGGATTCTTCACTTTCAAACCTGCACAACACAAAAACAGCCTCTGTTCACAAAAGGACCTTTCAGCACTTCCTACACTACCAGACATGAA CCAGAACCATTTTCCTCTGCTACCAAAGCTTCCACCTTTACCTCAACTCCCTCCTCTCCCTAGTCTCCCAAGGATGCCCTTTTTTCCACCTTGGTCTGGA AAGACCAAGCAGGCTGCTTCTGGGAAACCCACTTTCAGAAAAGGTCTAGGAGATCATCATGATAATGATAATGATGATGATCAATTGTCTAATCAGAAAT CAAGACAAAAACATCATCATGAAACTACTCAGCCTCAGGGTTTCCTCCCAATGCCGCCAATTTTTCCACCAAATCCGTTAATACCATCTCCACCGTTGAT ACCAAACCCTTTCCAGCCACCGCCTTCAGTGTTGCCTCCAATTTTTCCAACACCTCCGCCTTCGTTGTTCCCTCCACTTTTTACGACACCTCCGCCGGCA CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNCCCCCCCCTGTTCTTGA
AA sequence Show only first row Show all	>Lus10005086 pacid=23171466 polypeptide=Lus10005086 locus=Lus10005086.g ID=Lus10005086.BGIv1.0 annot-version=v1.0 MGCFSIFAVLYLLSFTFTEAKHEATAANKNDAAIVVGTVYCDTCFHDADTRFISGASVAVECRRGRFRQEVKTNEQGKFKVKLPFSVNKQVQSIRRCSVK LVSSSDPSCAVASTANSTSSFHRIKNNQGDNLHVFSAGFFTFKPAQHKNSLCSQKDLSALPTLPDMNQNHFPLLPKLPPLPQLPPLPSLPRMPFFPPWSG KTKQAASGKPTFRKGLGDHHDNDNDDDQLSNQKSRQKHHHETTQPQGFLPMPPIFPPNPLIPSPPLIPNPFQPPPSVLPPIFPTPPPSLFPPLFTTPPPA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPCS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15780			Pollen Ole e 1 allergen and ex...		Lus10005086 [exp]	0	1
AT1G22490	bHLH	bHLH094	basic helix-loop-helix (bHLH) ...		Lus10000332 [exp]	1.0	0.9414
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Lus10024142 [exp]	4.5	0.9212
AT1G48100			Pectin lyase-like superfamily ...		Lus10037834 [exp]	8.1	0.8892
AT3G53630			unknown protein		Lus10023752 [exp]	11.7	0.9085
AT5G25500			unknown protein		Lus10002897 [exp]	16.5	0.8842
AT1G73160			UDP-Glycosyltransferase superf...		Lus10032187 [exp]	20.1	0.9067
AT5G08570			Pyruvate kinase family protein...		Lus10041003 [exp]	21.3	0.9002
AT1G65900			unknown protein		Lus10020799 [exp]	24.0	0.8531
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Lus10038109 [exp]	25.1	0.8632
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Lus10006032 [exp]	29.5	0.8973

Compare expression of checked genes

Lus10005086 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.