Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47710 47 / 4e-06 Serine protease inhibitor (SERPIN) family protein (.1) AT2G26390 46 / 7e-06 Serine protease inhibitor (SERPIN) family protein (.1) AT3G45220 44 / 3e-05 Serine protease inhibitor (SERPIN) family protein (.1) AT1G62170 44 / 5e-05 Serine protease inhibitor (SERPIN) family protein (.1), Serine protease inhibitor (SERPIN) family protein (.2) AT1G64030 43 / 7e-05 ATSRP3 serpin 3 (.1) AT2G25240 43 / 0.0001 Serine protease inhibitor (SERPIN) family protein (.1) AT1G64010 40 / 0.0003 Serine protease inhibitor (SERPIN) family protein (.1) AT2G35580 40 / 0.0007 Serine protease inhibitor (SERPIN) family protein (.1) AT2G14540 40 / 0.0008 ATSRP2 serpin 2 (.1) AT1G62160 40 / 0.0008 Serine protease inhibitor (SERPIN) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034364 [exp] 186 / 6e-57 AT1G47710 296 / 4e-97 Serine protease inhibitor (SERPIN) family protein (.1) Lus10005089 [exp] 77 / 3e-16 AT1G47710 306 / 2e-101 Serine protease inhibitor (SERPIN) family protein (.1) Lus10034362 [exp] 54 / 2e-06 AT1G47710 274 / 1e-89 Serine protease inhibitor (SERPIN) family protein (.1) Lus10016386 [exp] 39 / 0.0003 ND 43 / 3e-06 Lus10002792 [exp] 40 / 0.0006 AT1G47710 495 / 6e-176 Serine protease inhibitor (SERPIN) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G100900 [exp] 85 / 4e-19 AT1G47710 337 / 2e-113 Serine protease inhibitor (SERPIN) family protein (.1) Potri.014G036000 [exp] 56 / 6e-09 AT1G47710 476 / 1e-168 Serine protease inhibitor (SERPIN) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00079 [flax] [poplar] Serpin Serpin (serine protease inhibitor)
Representative CDS sequence Show only first row Show all	>Lus10005087 pacid=23171453 polypeptide=Lus10005087 locus=Lus10005087.g ID=Lus10005087.BGIv1.0 annot-version=v1.0 ATGGAACAGCAACAAATAGATGGACAGAAGAAGCTCATCAATAGCTGCTTCAACACTGCTTTCTCTTTGGATATGGCACTCCATATCCTCTTTAAAGAAG CAGCCTGCAGTAAAGCCTCAAACTTTGTGTTCTCCCCTTTCCCAATCCCCTCTATGCTTTGCCTGATTGCAGTCGGAGCAAAAGAGTTTACACTGGAACG CCTTCTTCCAATTCTGGGTTCCAATAGCTTGGAAGAACTCAATTCTCTAACCTCACAGATTAATTTCCTCCCCTCTTGTACCACCAGCCCCGTCGTTTCA TTCCTCAACACTGCATGGGTTGATCAAAAGTTCAAGCTTAAGCCTGCATTTCAGAAACACGGAGTCTTCGGTGGCGGTGTCGAAGATGTTCCACAAGGCG TGTATCGAAGTGAACGAGGAAGGGACGGAAGTGCGGCGATGACTACTCCGAGATTTGTGAGGAAAGCAAGAAGGGTGAACCCTCCGAGCTTTGTAGCTGA CCATGCTTTCTTGTTCACAGCAGTGGAAGAAAGGTCTGGAATTTTGTTGTTCGTTGGTGCTGTGTTTAATCCTCTGCTTGCTGAAGGGGAAGAAGAAGGG TGTAGCTGCAAATTGGCAGCTGGAGAGCCAAGTACAATAAAGAAGCCACGGAATCAGTAA
AA sequence Show only first row Show all	>Lus10005087 pacid=23171453 polypeptide=Lus10005087 locus=Lus10005087.g ID=Lus10005087.BGIv1.0 annot-version=v1.0 MEQQQIDGQKKLINSCFNTAFSLDMALHILFKEAACSKASNFVFSPFPIPSMLCLIAVGAKEFTLERLLPILGSNSLEELNSLTSQINFLPSCTTSPVVS FLNTAWVDQKFKLKPAFQKHGVFGGGVEDVPQGVYRSERGRDGSAAMTTPRFVRKARRVNPPSFVADHAFLFTAVEERSGILLFVGAVFNPLLAEGEEEG CSCKLAAGEPSTIKKPRNQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26390			Serine protease inhibitor (SER...		Lus10005087 [exp]	0	1
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10001010 [exp]	4.7	0.8673
AT2G34930			disease resistance family prot...		Lus10001035 [exp]	8.8	0.8583
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10028201 [exp]	9.0	0.8557
AT4G26540			Leucine-rich repeat receptor-l...		Lus10005848 [exp]	12.2	0.7855
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10041764 [exp]	13.0	0.7876
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10017707 [exp]	13.3	0.7647
AT5G02390		DAU1	DUO1-activated unknown 1, Prot...		Lus10016715 [exp]	14.0	0.8347
					Lus10004778 [exp]	15.4	0.8428
AT2G37670			Transducin/WD40 repeat-like su...		Lus10003974 [exp]	18.8	0.7927
AT1G79840	HD	GL2	GLABRA 2, HD-ZIP IV family of ...		Lus10011440 [exp]	23.3	0.8082

Compare expression of checked genes

Lus10005087 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.