Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47710 306 / 3e-101 Serine protease inhibitor (SERPIN) family protein (.1) AT2G25240 271 / 1e-87 Serine protease inhibitor (SERPIN) family protein (.1) AT3G45220 263 / 3e-84 Serine protease inhibitor (SERPIN) family protein (.1) AT2G26390 257 / 3e-82 Serine protease inhibitor (SERPIN) family protein (.1) AT1G62170 227 / 6e-70 Serine protease inhibitor (SERPIN) family protein (.1), Serine protease inhibitor (SERPIN) family protein (.2) AT2G35580 214 / 6e-66 Serine protease inhibitor (SERPIN) family protein (.1) AT1G64030 205 / 4e-62 ATSRP3 serpin 3 (.1) AT2G14540 198 / 3e-59 ATSRP2 serpin 2 (.1) AT1G64010 118 / 2e-31 Serine protease inhibitor (SERPIN) family protein (.1) AT1G63280 95 / 1e-23 Serine protease inhibitor (SERPIN) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034362 [exp] 633 / 0 AT1G47710 274 / 1e-89 Serine protease inhibitor (SERPIN) family protein (.1) Lus10034364 [exp] 380 / 1e-129 AT1G47710 296 / 4e-97 Serine protease inhibitor (SERPIN) family protein (.1) Lus10002792 [exp] 330 / 2e-110 AT1G47710 495 / 6e-176 Serine protease inhibitor (SERPIN) family protein (.1) Lus10032754 [exp] 330 / 2e-110 AT1G47710 487 / 1e-172 Serine protease inhibitor (SERPIN) family protein (.1) Lus10019009 [exp] 191 / 1e-56 AT1G47710 209 / 9e-64 Serine protease inhibitor (SERPIN) family protein (.1) Lus10040926 [exp] 107 / 1e-26 AT1G47710 115 / 2e-30 Serine protease inhibitor (SERPIN) family protein (.1) Lus10032600 [exp] 103 / 6e-25 AT1G47710 99 / 6e-24 Serine protease inhibitor (SERPIN) family protein (.1) Lus10023541 [exp] 89 / 5e-20 AT1G62170 120 / 1e-31 Serine protease inhibitor (SERPIN) family protein (.1), Serine protease inhibitor (SERPIN) family protein (.2) Lus10005087 [exp] 84 / 3e-18 AT2G26390 44 / 6e-10 Serine protease inhibitor (SERPIN) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G100900 [exp] 392 / 7e-135 AT1G47710 337 / 2e-113 Serine protease inhibitor (SERPIN) family protein (.1) Potri.014G036000 [exp] 287 / 7e-94 AT1G47710 476 / 1e-168 Serine protease inhibitor (SERPIN) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00079 [flax] [poplar] Serpin Serpin (serine protease inhibitor)
Representative CDS sequence Show only first row Show all	>Lus10005089 pacid=23171458 polypeptide=Lus10005089 locus=Lus10005089.g ID=Lus10005089.BGIv1.0 annot-version=v1.0 ATGGAAATCAACATAGAACATCAGCTGAGCCCCTGCATCAGCAGATTCAACAACACTTGTTCACTGCTTGTAGCAATCCATGTCCTGATCAAGCAAGTAG ATAAAAGATCGAATTTCGTATTCTCCCCTCTTTCGTTTCACTCCATGTTAAGCTTGATCGCTTTGGGCTCTGAAGGTCCTACTCTCAACCAGCTCCTTTC CTTCCTAGATATAAAGGGTGTCGATGAACTCAACTTCTTGGCCTCCCACCTCGTTTCTTCAATCATATCGCATCCGATCTCAAACGAGAACATCGATGCT CAATCCCCTGTAGTGTCGTTTATCAACGGCGCTTGGTTGGACCAACTTTTCAAGCTGAAGCCTTCTTTTGAGGAAGTTGTGAGAAATGTTTATCTTGCTA CTGCAAGTGAGGTTGACTTCCTCAACAAGTTTGACCAAGTAAGAGAGGAAATCAATTCATGGGCAGAGAGGGAAAGCAGAGGACTTGTAACAAACCTCTT ACCAGAAGATGGTCTGGACGAAGAGACAGTTCTGGTACTTGCAAATGCACTCTACTTCAAAGGAATATGGGACAGGCCATTCGATTCGTCCAAGACAGAG CACAAAGACTTCAACCTCCTCGATGGCGAAACAGTTCGAGTCCCTTTCATGACAACCGTCCCCAATCAGAAGCATTTCTATGCATCATCGATCAATCATC AGGTTCTGAAGGTTCCGTATCGGCCAGGACACGATGCCAGGAGGAGATTCTCCATGTGTTTCTTTCTCTCTACTGCAAGAGATGGGTTATCAGGCTTAGT AGAGCGAATTAGAAACGATCCCACAATGTTGAATAATGATAAACATGTTGGACAAGAGTTGTTGCAGGAAAGGAATGTGTACCCTGTTTGGATTCCTCGG TTCAAGCTGTCTTTTGAGGTTGAAGCTTCAAGTACACTGAGGGAAATGGGAGTTGACTTACCTTTCAGTGATATGTACGGGCTAATGGCAATGGTGGAGT CGAGCGAACCAGTTGTGCTGTCGAAGATGTTCCATAAGTCGGTGATTGAAGTGAACGAGGAAGGAACTGAAGCTTCTTCCGGTAGTGCTGGAAGGATTAG AGGTATGCGTTGCAGGTCGGCTGGACCTCCAAGTTTCGTCGCTGACCATCCTTTCCTTTTCACTATCGTGGAAGAGAATTCTGGGTCTGTCTTGTTTATA GGAGCTGTTCTCAATCCACTGTTAGTTTCTTGA
AA sequence Show only first row Show all	>Lus10005089 pacid=23171458 polypeptide=Lus10005089 locus=Lus10005089.g ID=Lus10005089.BGIv1.0 annot-version=v1.0 MEINIEHQLSPCISRFNNTCSLLVAIHVLIKQVDKRSNFVFSPLSFHSMLSLIALGSEGPTLNQLLSFLDIKGVDELNFLASHLVSSIISHPISNENIDA QSPVVSFINGAWLDQLFKLKPSFEEVVRNVYLATASEVDFLNKFDQVREEINSWAERESRGLVTNLLPEDGLDEETVLVLANALYFKGIWDRPFDSSKTE HKDFNLLDGETVRVPFMTTVPNQKHFYASSINHQVLKVPYRPGHDARRRFSMCFFLSTARDGLSGLVERIRNDPTMLNNDKHVGQELLQERNVYPVWIPR FKLSFEVEASSTLREMGVDLPFSDMYGLMAMVESSEPVVLSKMFHKSVIEVNEEGTEASSGSAGRIRGMRCRSAGPPSFVADHPFLFTIVEENSGSVLFI GAVLNPLLVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47710			Serine protease inhibitor (SER...		Lus10005089 [exp]	0	1
AT1G14160			Uncharacterised protein family...		Lus10037160 [exp]	1.0	0.9878
AT5G47720			Thiolase family protein (.1.2....		Lus10039109 [exp]	1.7	0.9849
AT5G41810			unknown protein		Lus10003901 [exp]	2.0	0.9853
					Lus10017917 [exp]	2.8	0.9831
AT4G17900			PLATZ transcription factor fam...		Lus10004577 [exp]	2.8	0.9759
AT3G26380			Melibiase family protein (.1)		Lus10006467 [exp]	3.7	0.9712
AT2G23790			Protein of unknown function (D...		Lus10016799 [exp]	3.7	0.9804
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Lus10042516 [exp]	3.9	0.9823
AT1G11530		ATCXXS1	C-terminal cysteine residue is...		Lus10007630 [exp]	4.7	0.9737
AT3G16990			Haem oxygenase-like, multi-hel...		Lus10037751 [exp]	4.9	0.9814

Compare expression of checked genes

Lus10005089 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.