Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69010 139 / 1e-37 bHLH bHLH102, BIM2 BES1-interacting Myc-like protein 2 (.1) AT5G38860 123 / 9e-32 bHLH bHLH141, BIM3 BES1-interacting Myc-like protein 3 (.1) AT5G08130 114 / 1e-27 bHLH BIM1, bHLH046 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT3G58880 54 / 1e-07 F-box/RNI-like superfamily protein (.1) AT1G69630 47 / 2e-05 F-box/RNI-like superfamily protein (.1) AT1G13570 46 / 3e-05 F-box/RNI-like superfamily protein (.1) AT2G39415 42 / 0.0001 F-box family protein (.1) AT1G80960 44 / 0.0002 F-box and Leucine Rich Repeat domains containing protein (.1.2.3) AT1G66310 44 / 0.0002 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G78750 44 / 0.0002 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034358 [exp] 490 / 1e-173 AT1G69010 168 / 1e-49 BES1-interacting Myc-like protein 2 (.1) Lus10026684 [exp] 157 / 7e-44 AT1G69010 276 / 6e-92 BES1-interacting Myc-like protein 2 (.1) Lus10004630 [exp] 147 / 2e-40 AT1G69010 257 / 2e-84 BES1-interacting Myc-like protein 2 (.1) Lus10007974 [exp] 125 / 8e-31 AT5G08130 330 / 1e-106 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10013502 [exp] 120 / 3e-29 AT5G08130 330 / 6e-107 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10028722 [exp] 115 / 1e-27 AT2G42730 76 / 1e-14 F-box family protein (.1.2) Lus10011268 [exp] 102 / 5e-25 AT5G41630 52 / 7e-08 F-box/RNI-like superfamily protein (.1) Lus10018863 [exp] 103 / 6e-25 AT5G44950 62 / 1e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10028721 [exp] 65 / 2e-12 AT5G53840 56 / 5e-10 F-box/RNI-like/FBD-like domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G112900 [exp] 271 / 9e-88 AT1G69010 186 / 1e-56 BES1-interacting Myc-like protein 2 (.1) Potri.017G101700 [exp] 259 / 5e-83 AT1G69010 184 / 5e-56 BES1-interacting Myc-like protein 2 (.1) Potri.012G065000 [exp] 167 / 1e-45 AT5G08130 352 / 7e-115 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.015G048000 [exp] 160 / 3e-43 AT5G08130 359 / 3e-117 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.010G137600 [exp] 149 / 3e-41 AT1G69010 325 / 4e-111 BES1-interacting Myc-like protein 2 (.1) Potri.008G112000 [exp] 147 / 3e-40 AT1G69010 292 / 4e-98 BES1-interacting Myc-like protein 2 (.1) Potri.011G024300 [exp] 48 / 1e-05 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Potri.001G322900 [exp] 47 / 3e-05 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.008G070800 [exp] 42 / 0.0004 AT2G40200 132 / 2e-37 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.011G024600 [exp] 42 / 0.0006 AT4G26350 95 / 9e-21 F-box/RNI-like/FBD-like domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10005091 pacid=23171490 polypeptide=Lus10005091 locus=Lus10005091.g ID=Lus10005091.BGIv1.0 annot-version=v1.0 ATGACCAAGTCCGTCAAGTCTCACGCGGAGGAAGATTATGATGCTGATGATTATGATTCTCCTTCTTCCAGAGGCGAAGTGGTGAAAAATGATGGCAAGA CTACTGACCTGAAAGGCAGTGCCTACAGGTCGAAGCATTCTGAGACAGAACAAAGGAGAAGGTGCAAGATCAACGAGAGATTTCAGATTCTTAGAGAACT CATACCTCAGAATGATCAAAAGAGAGACAAGGCTTCCTTATTGTTAGAGGAAAGATTACAGGTGTATGAGGGATCATACCATGGTTGGACTCAGGAGCAA TTGGTCCCATGGAAAAATCACGCAACATCAGAAAATCTAGTGGACAATTCTCAAATTTTGAAGGATTGTTCTGCCCATGACGGTACTGCAGGACTGGCAA ATGTCCGAAGATCAATAGAATCTGGTATGGAAACTTCTACAGTATGCAAAGAATTGGATCATACCCCTGGAGTACTGCCATCTGTTCAATATAGTATGCA ATCAGGCTCGAGTATGATTGATGCAATTGGAAGGCCTAATATCCTGCCTACACAGTGTTTGCAAGGTTCTGTTTCAGGTGCCGAAAACATGATCCATCAA ATTCACCCTGAACTGTGGCAAAGTCAACCGTGTATCACTGCGTGTACAGCACCAAGCAGTGTAGTGAATGCTCAAGAGCTAACAAGAGGGCACGGATCTG ATAGCATCTCCAATGCTTATTCTCAAGGGGTTCTGAGCAGTCTGGCCCAAGCACTGGAGTCATCTGGTGTGGATTTATCTGAGACTAGCATCTCAGTCAA GATTGATGTCGGCAAAAGAGCAAAGCACGGAGCTACTGGCTTACAGTTATCGCCTCCTAAGGAAGACGAAATGCTAAGAGGAGACTGCGATCGTGTTGAT TGGATTAGTAACTTGCTTGATGAAATCCTTGTCAACATTTTGCGTCTTTTAACCCATCACGAAGCAGCAGCAACTTCAGTGCTCTCAAGTAGATGGGTAC ATTTGTGGAAATCGGCAGTGACGGACCTGACTGTGCTGGACTTCGACGGATTCAAATTGTTGGATAATCCGATGGAACCTGTGAACATCGAGGACTTGAT TATTTTGTTGGATGCTGATCCTTTCGACGGATCCTCTCCGAAGAGCGAAGAAATGGTGGTGGAAAAAAGATTCAAGTACATCAGCTGGGTGAATAGCGTT TTGAGGCAGCACAATGCCTCCAAGATAACCAAGTTTCTAATCTCATCCGACTTGGAACTACGTTGCAATTCCCAAGGCGATATAGACCGATGGCTCGAGT TTGCAATTTCAAAGAGAGTTGAGTACCTCGAACTCTCCCTGGGCGTTAAGTGTTCATTCCGAATTCAGCCACTGGCAGGACTATAA
AA sequence Show only first row Show all	>Lus10005091 pacid=23171490 polypeptide=Lus10005091 locus=Lus10005091.g ID=Lus10005091.BGIv1.0 annot-version=v1.0 MTKSVKSHAEEDYDADDYDSPSSRGEVVKNDGKTTDLKGSAYRSKHSETEQRRRCKINERFQILRELIPQNDQKRDKASLLLEERLQVYEGSYHGWTQEQ LVPWKNHATSENLVDNSQILKDCSAHDGTAGLANVRRSIESGMETSTVCKELDHTPGVLPSVQYSMQSGSSMIDAIGRPNILPTQCLQGSVSGAENMIHQ IHPELWQSQPCITACTAPSSVVNAQELTRGHGSDSISNAYSQGVLSSLAQALESSGVDLSETSISVKIDVGKRAKHGATGLQLSPPKEDEMLRGDCDRVD WISNLLDEILVNILRLLTHHEAAATSVLSSRWVHLWKSAVTDLTVLDFDGFKLLDNPMEPVNIEDLIILLDADPFDGSSPKSEEMVVEKRFKYISWVNSV LRQHNASKITKFLISSDLELRCNSQGDIDRWLEFAISKRVEYLELSLGVKCSFRIQPLAGL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69010	bHLH	bHLH102, BIM2	BES1-interacting Myc-like prot...		Lus10005091 [exp]	0	1
					Lus10014678 [exp]	1.0	0.9500
AT5G39360		EDL2	EID1-like 2 (.1)		Lus10029662 [exp]	2.4	0.9140
AT2G17787			unknown protein		Lus10017274 [exp]	2.4	0.9311
AT1G76480			unknown protein		Lus10006035 [exp]	2.8	0.9367
AT1G11330			S-locus lectin protein kinase ...		Lus10015422 [exp]	3.5	0.9254
AT1G15860			Domain of unknown function (DU...		Lus10026216 [exp]	3.9	0.9170
AT5G15940			NAD(P)-binding Rossmann-fold s...		Lus10022466 [exp]	4.0	0.9027
AT2G23940			Protein of unknown function (D...		Lus10028450 [exp]	4.5	0.9099
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Lus10033021 [exp]	5.3	0.9038
					Lus10042562 [exp]	5.5	0.9032

Compare expression of checked genes

Lus10005091 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.