Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42930 473 / 1e-164 alpha/beta-Hydrolases superfamily protein (.1) AT5G67050 463 / 1e-160 alpha/beta-Hydrolases superfamily protein (.1) AT1G45201 432 / 2e-148 AtTLL1 ARABIDOPSIS THALIANA TRIACYLGLYCEROL LIPASE-LIKE 1, triacylglycerol lipase-like 1 (.1.2) AT1G56630 425 / 1e-145 alpha/beta-Hydrolases superfamily protein (.1) AT3G14360 360 / 1e-119 alpha/beta-Hydrolases superfamily protein (.1) AT5G18640 58 / 6e-09 alpha/beta-Hydrolases superfamily protein (.1) AT1G30370 58 / 7e-09 DLAH DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) AT5G18630 56 / 1e-08 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT2G44810 53 / 2e-07 DAD1 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) AT1G06250 53 / 3e-07 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009361 [exp] 595 / 0 AT5G42930 478 / 4e-166 alpha/beta-Hydrolases superfamily protein (.1) Lus10005709 [exp] 424 / 6e-145 AT5G42930 517 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10042648 [exp] 419 / 7e-143 AT5G42930 514 / 2e-180 alpha/beta-Hydrolases superfamily protein (.1) Lus10037465 [exp] 375 / 2e-125 AT3G14360 584 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10003925 [exp] 364 / 2e-121 AT3G14360 574 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10015521 [exp] 62 / 5e-10 AT1G30370 524 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10038526 [exp] 60 / 2e-09 AT1G30370 539 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10000600 [exp] 58 / 3e-09 AT4G16820 304 / 4e-101 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10033968 [exp] 59 / 4e-09 AT5G18640 463 / 5e-164 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G044500 [exp] 617 / 0 AT5G67050 502 / 7e-176 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G027400 [exp] 490 / 2e-171 AT5G42930 529 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G027500 [exp] 489 / 4e-171 AT5G42930 529 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G027800 [exp] 467 / 2e-162 AT5G42930 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G138800 [exp] 457 / 2e-158 AT5G42930 433 / 7e-149 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G161500 [exp] 356 / 2e-117 AT3G14360 633 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G073800 [exp] 352 / 5e-116 AT3G14360 619 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G057900 [exp] 69 / 4e-12 AT1G30370 626 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Potri.001G263200 [exp] 66 / 3e-11 AT1G30370 607 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Potri.003G081500 [exp] 62 / 4e-10 AT4G16820 558 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10005092 pacid=23171471 polypeptide=Lus10005092 locus=Lus10005092.g ID=Lus10005092.BGIv1.0 annot-version=v1.0 ATGGAATGCGATAAGCGATTCTGTAACGACTACATGCTTCTAAACTATGAAAACCTCAAACTATCTGATCTGTTTGGATTGCTGTTCTCCTCTGACATAG AAAAGAGCAAGTTGGTGGAAAGTAAGGAGACCAAAGAAGAAAGCTTTGAGCGAAGATGGCTAATGTTCGTATCCATTCTACTTCAAAAGACTCTTCACTT CTTCTCCAAACCCTTGTCCTTCGTCGGATCATCCATTGAGATGTGGCTCTGTCTCTTGTCCAATAACGGCGGCTTCCGAAGCCTCTTGCTCAACGCCTTC ACTGGGAAAGTGGTAGTTCCTGATGAATCAGCGGCAACATTCATATCCTTCACTGGGAATTTCGACAAGCGAACTAAGTTAGACCCCAACATCAGACGCG AAGATCCACGATACGATGCCTTACTGGCTGTCATGTCCGCCAAAGCTTCCTATGAGAACCACGCTTATCTTCAAACCCTTGTCAACCTTCACTGGCAGAT GGAATTTTTGGGATCATTTGACTTCTGGAACGATTACCAGAACAAAGCAACGACCCAAGCGTTCCTTCTACGTGACAGGGCAGATGACAGCGGCGAAGAA ACAATAGTGGTGGCGTTCCGAGGAACAGAGCCGTTCGATGCAGATGCATGGTGCTCTGATATCGACATTTCATGGTACCAGATCCGAGGAGTGGGAAGGA TCCATGGCGGATTCATGAAGGCCCTGGGCCTGCAGAAGTGCGTTGGCTGGCCAAACAAGCTTCAAACCCACAAAAATTATAACCGCTTATACGCTTACTA TCATATCAGGGAAATGCTCAGGGAAATCATGTCCCGAAACGAGAAGGCAAAGTACATAGTAACAGGGCATAGCCTAGGTGCAGCCCTGGCGGTTCTATTT CCCGCGGTCCTATCATTGCACGGTGATGAATTGTTGTTGAAGAGACTGAAAGGAATTTACGCATTCGGGCAGCCTAGAGTAGGTGACCGAGATTTCGGAA ACTACATGAAAGCGAAACTTGAAGAGTATGGGATACGTTACTACAGGTTTGTTTACGGGAACGACATCGTGCCTAGGTTGCCGTATGATGATTCCTGCCT TATGTACAAGCATTTTGGGACCTGCGTCTACTTCGACAGGAATTACCAGGGACGGGTGGTTGAGAAAGAGCCTTACAGTAACTATTTCTCGCCACTAGGG GTAATGTCTATGGTCGCAAATGCAGTTATGGAGCTAATCAGAAGCTTCACAATATGCAGAGTTCATGGAGAAGATTACAGTGAAGGATGGTTCCTGAGAA TGTTGAGAGTAATTGGAGTGTTCATTCCTGGCATTTCAGCACATTGCCCTCAGGATTATGTCAATGCCACCCGTTTGGGAAACCTTCACCTTTTTTCTTC CTTATGA
AA sequence Show only first row Show all	>Lus10005092 pacid=23171471 polypeptide=Lus10005092 locus=Lus10005092.g ID=Lus10005092.BGIv1.0 annot-version=v1.0 MECDKRFCNDYMLLNYENLKLSDLFGLLFSSDIEKSKLVESKETKEESFERRWLMFVSILLQKTLHFFSKPLSFVGSSIEMWLCLLSNNGGFRSLLLNAF TGKVVVPDESAATFISFTGNFDKRTKLDPNIRREDPRYDALLAVMSAKASYENHAYLQTLVNLHWQMEFLGSFDFWNDYQNKATTQAFLLRDRADDSGEE TIVVAFRGTEPFDADAWCSDIDISWYQIRGVGRIHGGFMKALGLQKCVGWPNKLQTHKNYNRLYAYYHIREMLREIMSRNEKAKYIVTGHSLGAALAVLF PAVLSLHGDELLLKRLKGIYAFGQPRVGDRDFGNYMKAKLEEYGIRYYRFVYGNDIVPRLPYDDSCLMYKHFGTCVYFDRNYQGRVVEKEPYSNYFSPLG VMSMVANAVMELIRSFTICRVHGEDYSEGWFLRMLRVIGVFIPGISAHCPQDYVNATRLGNLHLFSSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42930			alpha/beta-Hydrolases superfam...		Lus10005092 [exp]	0	1
AT5G35740			Carbohydrate-binding X8 domain...		Lus10038801 [exp]	1.0	0.9449
AT5G14890			NHL domain-containing protein ...		Lus10014529 [exp]	1.7	0.9326
AT4G05220			Late embryogenesis abundant (L...		Lus10006755 [exp]	2.8	0.9425
AT3G15800			Glycosyl hydrolase superfamily...		Lus10011482 [exp]	8.9	0.9059
AT4G15450			Senescence/dehydration-associa...		Lus10034970 [exp]	9.2	0.8652
AT5G36930			Disease resistance protein (TI...		Lus10007811 [exp]	11.8	0.8939
AT2G27140			HSP20-like chaperones superfam...		Lus10003356 [exp]	12.2	0.9138
AT5G35740			Carbohydrate-binding X8 domain...		Lus10039059 [exp]	12.3	0.8924
AT5G36930			Disease resistance protein (TI...		Lus10000331 [exp]	13.2	0.8963
AT2G20362			unknown protein		Lus10022860 [exp]	14.4	0.8830

Compare expression of checked genes

Lus10005092 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.