Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38420 186 / 3e-60 Ribulose bisphosphate carboxylase (small chain) family protein (.1) AT1G67090 185 / 3e-60 RBCS1A ribulose bisphosphate carboxylase small chain 1A (.1.2) AT5G38430 185 / 5e-60 Ribulose bisphosphate carboxylase (small chain) family protein (.1) AT5G38410 183 / 3e-59 Ribulose bisphosphate carboxylase (small chain) family protein (.1), Ribulose bisphosphate carboxylase (small chain) family protein (.2), Ribulose bisphosphate carboxylase (small chain) family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034357 [exp] 311 / 7e-110 AT1G67090 182 / 7e-59 ribulose bisphosphate carboxylase small chain 1A (.1.2) Lus10028471 [exp] 192 / 6e-63 AT5G38420 265 / 1e-91 Ribulose bisphosphate carboxylase (small chain) family protein (.1) Lus10009172 [exp] 191 / 2e-62 AT5G38420 264 / 2e-91 Ribulose bisphosphate carboxylase (small chain) family protein (.1) Lus10033558 [exp] 188 / 2e-61 AT5G38410 272 / 1e-94 Ribulose bisphosphate carboxylase (small chain) family protein (.1), Ribulose bisphosphate carboxylase (small chain) family protein (.2), Ribulose bisphosphate carboxylase (small chain) family protein (.3) Lus10017597 [exp] 188 / 2e-61 AT5G38410 271 / 2e-94 Ribulose bisphosphate carboxylase (small chain) family protein (.1), Ribulose bisphosphate carboxylase (small chain) family protein (.2), Ribulose bisphosphate carboxylase (small chain) family protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G091401 [exp] 239 / 7e-82 AT5G38410 183 / 1e-59 Ribulose bisphosphate carboxylase (small chain) family protein (.1), Ribulose bisphosphate carboxylase (small chain) family protein (.2), Ribulose bisphosphate carboxylase (small chain) family protein (.3) Potri.017G114600 [exp] 178 / 3e-57 AT1G67090 292 / 2e-102 ribulose bisphosphate carboxylase small chain 1A (.1.2) Potri.004G100000 [exp] 177 / 6e-57 AT1G67090 286 / 3e-100 ribulose bisphosphate carboxylase small chain 1A (.1.2) Potri.006G167901 [exp] 0 / 1 AT5G38410 0 / 1 Ribulose bisphosphate carboxylase (small chain) family protein (.1), Ribulose bisphosphate carboxylase (small chain) family protein (.2), Ribulose bisphosphate carboxylase (small chain) family protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00101 [flax] [poplar] RuBisCO_small Ribulose bisphosphate carboxylase, small chain
Representative CDS sequence Show only first row Show all	>Lus10005093 pacid=23171465 polypeptide=Lus10005093 locus=Lus10005093.g ID=Lus10005093.BGIv1.0 annot-version=v1.0 ATGTCCGGAATGTCCTTGACCGTTGCCGGTTACTACCATGGCTTGAAATCCAACTCATCATCATTGCCGGTCTACAACAGTAACACCAAAGCTGCTGAAT CTGATGTTTCATGGCGGAGGAGGACTTTGTCAAACAACAATGGGTCGAGGATGATGAGGAGGATAACGTGCTGCATGCAGACATGGAACCCGATCAACAA CAAGAAGTTCGAGACTCTGTCTTACCTGCCTCCTCTGTCTCAGGATTCCATCGCCAGGGAGATTGATTACATGCTCACCAAGGGTTGGATTCCTTGCCTC GAATTTGACCAGGTCGGGTATGTGTACAGGGAGAACAGCAGGATGCCGGGGTACTACGACGGGAGGTACTGGACACTGTGGAAGTTGCCAATGTTCGGAT GCACTGACTCATCCCAAGTGTTGAACGAAATGCAGCTCTGCAAGCAAACTTACCCTAATGCATACATAAGGTGCCTTGCTTTCGACAACAAGCAGCAGGT TCAGTGCATGGCTTTCCTCATCCAAACCCCTTCTTCCTCTGCCACTTGA
AA sequence Show only first row Show all	>Lus10005093 pacid=23171465 polypeptide=Lus10005093 locus=Lus10005093.g ID=Lus10005093.BGIv1.0 annot-version=v1.0 MSGMSLTVAGYYHGLKSNSSSLPVYNSNTKAAESDVSWRRRTLSNNNGSRMMRRITCCMQTWNPINNKKFETLSYLPPLSQDSIAREIDYMLTKGWIPCL EFDQVGYVYRENSRMPGYYDGRYWTLWKLPMFGCTDSSQVLNEMQLCKQTYPNAYIRCLAFDNKQQVQCMAFLIQTPSSSAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38420			Ribulose bisphosphate carboxyl...		Lus10005093 [exp]	0	1
AT4G23410		TET5	tetraspanin5 (.1)		Lus10036518 [exp]	1.4	0.8546
AT4G02420			Concanavalin A-like lectin pro...		Lus10016226 [exp]	6.3	0.7791
					Lus10010828 [exp]	8.7	0.8519
AT4G09900		ATMES12	ARABIDOPSIS THALIANA METHYL ES...		Lus10009489 [exp]	12.5	0.8454
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10020330 [exp]	13.7	0.8533
AT2G32750			Exostosin family protein (.1)		Lus10007426 [exp]	20.2	0.7674
					Lus10009699 [exp]	20.7	0.8389
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10034967 [exp]	28.6	0.7794
AT3G28540			P-loop containing nucleoside t...		Lus10007270 [exp]	28.7	0.8286
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10033212 [exp]	29.0	0.8292

Compare expression of checked genes

Lus10005093 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.