Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G30300 869 / 0 O-fucosyltransferase family protein (.1) AT3G03810 583 / 0 EDA30 embryo sac development arrest 30, O-fucosyltransferase family protein (.1) AT5G64600 181 / 2e-49 O-fucosyltransferase family protein (.1) AT4G38390 174 / 6e-47 RHS17 root hair specific 17 (.1) AT1G20550 169 / 4e-45 O-fucosyltransferase family protein (.1) AT4G16650 167 / 3e-44 O-fucosyltransferase family protein (.1) AT1G04910 166 / 3e-44 O-fucosyltransferase family protein (.1) AT1G76270 164 / 4e-43 O-fucosyltransferase family protein (.1) AT1G22460 159 / 2e-41 O-fucosyltransferase family protein (.1) AT1G11990 155 / 3e-40 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034356 [exp] 1265 / 0 AT3G30300 895 / 0.0 O-fucosyltransferase family protein (.1) Lus10010654 [exp] 558 / 0 AT3G03810 840 / 0.0 embryo sac development arrest 30, O-fucosyltransferase family protein (.1) Lus10013612 [exp] 555 / 0 AT3G03810 843 / 0.0 embryo sac development arrest 30, O-fucosyltransferase family protein (.1) Lus10028957 [exp] 177 / 6e-48 AT4G16650 771 / 0.0 O-fucosyltransferase family protein (.1) Lus10007481 [exp] 176 / 2e-47 AT4G16650 766 / 0.0 O-fucosyltransferase family protein (.1) Lus10004729 [exp] 171 / 2e-45 AT4G16650 756 / 0.0 O-fucosyltransferase family protein (.1) Lus10014444 [exp] 170 / 3e-45 AT1G20550 650 / 0.0 O-fucosyltransferase family protein (.1) Lus10037830 [exp] 169 / 3e-45 AT1G04910 851 / 0.0 O-fucosyltransferase family protein (.1) Lus10023948 [exp] 169 / 6e-45 AT1G20550 697 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G113200 [exp] 990 / 0 AT3G30300 886 / 0.0 O-fucosyltransferase family protein (.1) Potri.017G101600 [exp] 985 / 0 AT3G30300 917 / 0.0 O-fucosyltransferase family protein (.1) Potri.013G056200 [exp] 591 / 0 AT3G03810 845 / 0.0 embryo sac development arrest 30, O-fucosyltransferase family protein (.1) Potri.019G036600 [exp] 580 / 0 AT3G03810 885 / 0.0 embryo sac development arrest 30, O-fucosyltransferase family protein (.1) Potri.004G183200 [exp] 175 / 7e-47 AT1G76270 713 / 0.0 O-fucosyltransferase family protein (.1) Potri.003G077500 [exp] 172 / 5e-46 AT4G16650 785 / 0.0 O-fucosyltransferase family protein (.1) Potri.001G157400 [exp] 171 / 8e-46 AT4G16650 773 / 0.0 O-fucosyltransferase family protein (.1) Potri.009G143100 [exp] 171 / 2e-45 AT1G76270 699 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G249900 [exp] 169 / 6e-45 AT1G76270 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.001G316800 [exp] 167 / 1e-44 AT1G04910 847 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10005094 pacid=23171486 polypeptide=Lus10005094 locus=Lus10005094.g ID=Lus10005094.BGIv1.0 annot-version=v1.0 ATGAAGGGAGAAGGCAATAACAGCAGTAAGGCGATAGTAATGAAGTCCAAGCTCAAATGGGTGGGCTTAGTTGGTCTCATCCTTTCAGCTCTCTCCCTAT TTGTCCACTTCCTTCTCGCCAGATTCTCCGACCAAGGCGCCTCCGATTACTACAACACTTCCATCACCATCTTCTCTTGGCGACCCGTCTTCGAGCTTCC TCACTTACCTAAATCTTCAATAGTACAGGGACCATTGTACAGTAGGCTTTGGGGTCCGGTTAGGCGGCTTGAATCTTTGCATCCATATGCCAATCCCAGA GGACCATACCCAGATCCCAGATCGGAATCAAGTGGGTATATCTTTGTCAGGATTCAAGGTGGTTTCCACGACATTAGGAGTTCGATAGCTGACGTGGTTG TGGTTGCTCGCCTTCTGAATGCGACCTTAGTAATTCCAGAGATTCAATCAACTACGAGCAGCAAAGGAATTAGCTCAGAGTTTAAGAGTTTTGCATATGT TTACAATGAGGACCAATTCATGGCAGCACTGGTAAAAGATGTGAGAGTTGTGAAAACGCTTCCCAAAAGTCTTAAAAGTGCACGGAGAAGAAAGAATATC CCCTCATTCCGAGTGCCTAGATCAGCTTCTCCATATTACTACTTGCATCATGTTCTGCCAGTGCTCAATAAGCATTCAGTGGCTGAAATAGTCATATCTG ATGGCGGATGCTTGCAGCCAATCCTTCCAGGCCATCTTGAAGAATATCAGAGGTTGAGGTGTAGAGTAACTTTCCATGCTTTGGTGGTCCGACAAGAGGT TCAGGAGCTTGCAACTAAAATTCTGCACAGACTGCGAGCTCCTCGAAGGCCATTTATCGCTTATGATCCTGGGTTGACAAGAGAAGCTTTAGCATTCTAT GGTTGTGCAGAGCTCTTCCAGGATGTGCATAGTGAACTTATTCAACACAAGCGAGCCTGGATGCGAAGACGTGGCATTGTCAAGGGCAAACTTTCCGTTA ACTCTGCAGAACAACGCCTTAATGGTTCATGCCCATTAATGCCTGAAGAGGTTGGTATTCTTCTTCGAGCATATGGGTATCCATGGGACACCATTATATA CGTTTCAGGCGGAGAAGTGTTTGGCGGCCAGAGGACATTGATTCCGTTGCATGCAATGTTCGAAAATGTGGTTGACAGGACTTCTCTAAGTGCAGCATGG GAGCTAACTAGGATTTATGGCCGTGAGGTCGACCTTGATAGTAAGTTCCCCAGGGCACCACCTTCTGTTGTACAAGAAAAGAAGACTGAGGCTTGGAAAA ATGTAGGACCTCGTCCTCGTCCCCTACCACCACCACCAGCTCGCTTCAAATATCCACATAACATAGAAGGTTGGTGGGGATGGGTGGCCGAAAGCGACAA TGAACCTGAGAGCACAGTTATGGAGTTGAGAACCAATGCTCATAAACTTCTATGGGAGGCCGTAGACTACCTGGTTTCAGTTGAAGCTGATGTCTTTATC TCCGGATTCGATCGTGATGGGAAAGGGCACCCGAGTTTGGGAAGCTTGGTCATGGGCCACAGGCTTTATCTCTCACCTGCCTCCAAAACCTTCCGTCCTG ACAGGAAGGAAGTTGTGAAGCTACTGGAAGAAAATCGGGAGCATCTATACGAAGCAAACCATACCTGGCTGGCATCTATCCGTCAGCATTTTAGAAGGAG TTTAATAGATGGCGCTTTGAATGCATCGGTAGCCTCAAAACCGTTATCCTTTCTCTCTCATCCAGTTCCTGAATGTTCTTGCTTGGGAACATCTGCACAT TCTGAGGTTGACTTGGGTGTCACGCAACGCTGCCCCAAGTGGATGACGAATGGCGAGACAAGCTCTAGATTAAAAGACAAGGAAACAGACGAGGAAGAGC TTGACGATGATGATGCTTCGTCTTCTGGTATGTTTTTCAAGCATAGTAGCGGGAATAACGAGAGTGGTGGTGGAGAAATGAACAAAGAAGAAGTTCCGTT GGAGGATCAAGAAGAGTCGGAGGTTGCAGAGTAG
AA sequence Show only first row Show all	>Lus10005094 pacid=23171486 polypeptide=Lus10005094 locus=Lus10005094.g ID=Lus10005094.BGIv1.0 annot-version=v1.0 MKGEGNNSSKAIVMKSKLKWVGLVGLILSALSLFVHFLLARFSDQGASDYYNTSITIFSWRPVFELPHLPKSSIVQGPLYSRLWGPVRRLESLHPYANPR GPYPDPRSESSGYIFVRIQGGFHDIRSSIADVVVVARLLNATLVIPEIQSTTSSKGISSEFKSFAYVYNEDQFMAALVKDVRVVKTLPKSLKSARRRKNI PSFRVPRSASPYYYLHHVLPVLNKHSVAEIVISDGGCLQPILPGHLEEYQRLRCRVTFHALVVRQEVQELATKILHRLRAPRRPFIAYDPGLTREALAFY GCAELFQDVHSELIQHKRAWMRRRGIVKGKLSVNSAEQRLNGSCPLMPEEVGILLRAYGYPWDTIIYVSGGEVFGGQRTLIPLHAMFENVVDRTSLSAAW ELTRIYGREVDLDSKFPRAPPSVVQEKKTEAWKNVGPRPRPLPPPPARFKYPHNIEGWWGWVAESDNEPESTVMELRTNAHKLLWEAVDYLVSVEADVFI SGFDRDGKGHPSLGSLVMGHRLYLSPASKTFRPDRKEVVKLLEENREHLYEANHTWLASIRQHFRRSLIDGALNASVASKPLSFLSHPVPECSCLGTSAH SEVDLGVTQRCPKWMTNGETSSRLKDKETDEEELDDDDASSSGMFFKHSSGNNESGGGEMNKEEVPLEDQEESEVAE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G30300			O-fucosyltransferase family pr...		Lus10005094 [exp]	0	1
AT2G02480		STI	STICHEL, AAA-type ATPase famil...		Lus10042401 [exp]	3.7	0.9052
AT5G49160		MET2, DMT1, DMT...	METHYLTRANSFERASE I, METHYLTRA...		Lus10019220 [exp]	3.9	0.9280
AT5G38690			Zinc-finger domain of monoamin...		Lus10017575 [exp]	5.8	0.8973
AT4G27760		FEY3, FEY	FOREVER YOUNG, NAD(P)-binding ...		Lus10009112 [exp]	6.6	0.8820
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Lus10023165 [exp]	8.1	0.8930
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10016332 [exp]	8.5	0.9132
AT5G44635		MCM6	MINICHROMOSOME MAINTENANCE 6, ...		Lus10038384 [exp]	13.0	0.9193
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10033205 [exp]	13.3	0.9019
AT2G47680	C3HZnF		zinc finger (CCCH type) helica...		Lus10030371 [exp]	13.6	0.9087
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10011481 [exp]	14.1	0.8959

Compare expression of checked genes

Lus10005094 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.