Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03890 695 / 0 UBDKGAMMA7, ATPI4KGAMMA7 ,PI4K GAMMA 7 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) AT1G26270 691 / 0 Phosphatidylinositol 3- and 4-kinase family protein (.1) AT1G13640 664 / 0 Phosphatidylinositol 3- and 4-kinase family protein (.1) AT2G40850 353 / 2e-114 ATPI4KGAMMA1 ,PI4K GAMMA 1 phosphoinositide 4-kinase gamma 1 (.1) AT3G56600 343 / 8e-111 Protein kinase superfamily protein (.1.2) AT5G24240 208 / 4e-59 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) AT1G64460 196 / 2e-57 Protein kinase superfamily protein (.1) AT2G46500 199 / 4e-56 UBDKGAMMA4, ATPI4KGAMMA4 ,PI4K GAMMA 4 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) AT1G27570 69 / 4e-12 phosphatidylinositol 3- and 4-kinase family protein (.1.2) AT3G43950 45 / 4e-05 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019197 [exp] 664 / 0 AT2G03890 873 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Lus10036834 [exp] 660 / 0 AT2G03890 874 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Lus10018104 [exp] 214 / 1e-61 AT5G24240 689 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Lus10022411 [exp] 210 / 8e-60 AT5G24240 731 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Lus10004005 [exp] 193 / 4e-56 AT2G46500 483 / 1e-169 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10030251 [exp] 192 / 7e-56 AT2G46500 484 / 3e-170 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10003190 [exp] 196 / 3e-55 AT2G46500 587 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10001817 [exp] 196 / 2e-54 AT2G46500 665 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10000012 [exp] 81 / 8e-18 AT1G26270 122 / 3e-33 Phosphatidylinositol 3- and 4-kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G137400 [exp] 748 / 0 AT2G03890 917 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Potri.017G101500 [exp] 745 / 0 AT2G03890 737 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Potri.008G112200 [exp] 668 / 0 AT2G03890 866 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Potri.006G031600 [exp] 349 / 1e-112 AT2G40850 489 / 2e-168 phosphoinositide 4-kinase gamma 1 (.1) Potri.012G014600 [exp] 212 / 2e-60 AT5G24240 767 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Potri.015G013600 [exp] 212 / 3e-60 AT5G24240 747 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Potri.001G090300 [exp] 199 / 9e-56 AT2G46500 699 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Potri.014G099000 [exp] 196 / 8e-55 AT2G46500 784 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00454 [flax] [poplar] PI3_PI4_kinase Phosphatidylinositol 3- and 4-kinase
Representative CDS sequence Show only first row Show all	>Lus10005095 pacid=23171461 polypeptide=Lus10005095 locus=Lus10005095.g ID=Lus10005095.BGIv1.0 annot-version=v1.0 ATGGCAGTTGCAGCTTTGAAAGGAAACTTTGCAGGTGATTATGGCGGAAGTAAACAGACTGAAGAAACATTTTCTAGGAGGCGACGTGTATTTGTTCAAA CTGAATCTGGATTTGTTTTGGGGATTGAACTAGATGTGAGTGACAGTGCTCATACGGTGAAGAGGAAGTTACAGCTTGCCCTCAATGTCCCAACTGAGGA GCGATCGTTAATGTTTGGGGATGTAATATTGAAAAATGATCTCAGTGAAGTTCGAAATTTCTATCCACTTCTCCTCACAAGGAACTTCATGCATAGAAGC TCATCAAGTCCATGTATCTCGCCTCGCGTTAAGGATCCTCAACAGATTGACCAGAGCAATCCTATTGAGATACTTGGATTTTCGGATCACTTTGCTGAAG CAAAGCCACTAGTGAAGGAAATCTCAAAGGCCATGAGGAATGGCGTTGAACCAACCCCAACTTATGGGGGCCTCGGGGGTGCATACTATTTCAAAAATTG CCAATTCGAAAATATTGCCATCGTGAAACCCACAGATGAAGAACCTTATGCACCCAACAACCCGAAAGGTTTTGTTGGGAAAGCTCTTGGTCAGCCTGGC CTAAAACGTTCAGTTCGGGTTGGGGAGACAGGATTCAGAGAAGTGGCAGCGTATCTTCTTGATTATGACCACTTTGCCAGCGTGCCGTCCACTGTCCTTG TAAAGGTGACACACTCAATTTTCAATATCAATGATAGAATGAATAAGGGTAAACAACTAAAGCAGGTTAGCAAGATTGCATCACTACAGCGATACATACC TCATGATTTTGATGCCAGTGACTACGGAACTTCCAGTTTTCCAGTTACTGCTGTGCATAGAATAGGGATTTTAGATATCCGAATTTTGAACACTGACAGA CATGCAGGGAATCTCCTAGTAAGGAAACTGGATGGGATTGGAAGATTTGGAAAAGTGGAACTTTTTCCTATTGATCATGGTCTCTGCCTTCCAGAAAACC TGGAGAACCCATATTTTGAGTGGATACACTGGCCACAAGCTTCAATTCCATTTTCTGACGACGAGCTGGAGTATATAAGTAGGCTTGACCCTTTTCGGGA TTCTGACATGTTGCGGAGGGAGCTACCAATGATTCGAGAGGCATGCCTCAGGATTCTTGTTGTTTGTACTATTTTCATGAAGCAAGCAGCGACTTTCGGT CTTACTCTTGGTGAGATTGGAGAAATGATGAGTAGGGAGTTCCACGGACCATTGGAGGAACCAAGTGAGTTTGAGCTTATTTGCATGGAGGCTAGAAGTC GACTAGAGGAGCAAGATTCCCCTTCTTCTGAAGTGAGATCAAGAGGTAACGAGGAGTTCCAGTTTGACATTGACTACGAGGAGGACTTAGATGCCCCTGT AAAAACGCTGGATATGGATTCAAGAACACTTTCATATGGGTCCAAGGCGGGAAACGACTGGAACCTACTTTCCAAGCTAGAGGAGAGTCTTGAAGAAGAG GATGGTGAGGCAAATGGTGAAGGCAATGGGATGGTAGCTACAGCTGTAGATACTAATACTAGTAGTGATCACCCCACCATAGTTCTTGGACGACCCATGC CTACCTTTTCTCAAAGGCCAGTGCTGACAAAAAACCCGAGCCTTGATGAGAATATATGGAGGCGTGAGATTGCAATGCAAAAACATAGCTATGTGTCTGG TATATCATCTGGAAACAATAATGCGAATGAACAACTTCATTCAAGCTGTAGTTTTGTTAAGCTTTCAGAGTTGAGTGAGGAGGAGTGGACAAGATTTCTT GAAAATTTTCAGAAGTTACTCTACCCAGCTTTCGGTAATCACGAATTGGGAAAGGCAGGGCAGAGGCACAGACAGAGGCTAGGATCCTCTTGCCAGTTTT GA
AA sequence Show only first row Show all	>Lus10005095 pacid=23171461 polypeptide=Lus10005095 locus=Lus10005095.g ID=Lus10005095.BGIv1.0 annot-version=v1.0 MAVAALKGNFAGDYGGSKQTEETFSRRRRVFVQTESGFVLGIELDVSDSAHTVKRKLQLALNVPTEERSLMFGDVILKNDLSEVRNFYPLLLTRNFMHRS SSSPCISPRVKDPQQIDQSNPIEILGFSDHFAEAKPLVKEISKAMRNGVEPTPTYGGLGGAYYFKNCQFENIAIVKPTDEEPYAPNNPKGFVGKALGQPG LKRSVRVGETGFREVAAYLLDYDHFASVPSTVLVKVTHSIFNINDRMNKGKQLKQVSKIASLQRYIPHDFDASDYGTSSFPVTAVHRIGILDIRILNTDR HAGNLLVRKLDGIGRFGKVELFPIDHGLCLPENLENPYFEWIHWPQASIPFSDDELEYISRLDPFRDSDMLRRELPMIREACLRILVVCTIFMKQAATFG LTLGEIGEMMSREFHGPLEEPSEFELICMEARSRLEEQDSPSSEVRSRGNEEFQFDIDYEEDLDAPVKTLDMDSRTLSYGSKAGNDWNLLSKLEESLEEE DGEANGEGNGMVATAVDTNTSSDHPTIVLGRPMPTFSQRPVLTKNPSLDENIWRREIAMQKHSYVSGISSGNNNANEQLHSSCSFVKLSELSEEEWTRFL ENFQKLLYPAFGNHELGKAGQRHRQRLGSSCQF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10005095 [exp]	0	1
AT5G14740		BETACA2, CA18, ...	CARBONIC ANHYDRASE 18, BETA CA...		Lus10030874 [exp]	8.5	0.6699
AT5G23040		CDF1	CELL GROWTH DEFECT FACTOR 1, P...		Lus10038965 [exp]	11.7	0.6469
AT1G21410		SKP2A	F-box/RNI-like superfamily pro...		Lus10018942 [exp]	22.9	0.6463
AT3G05675			BTB/POZ domain-containing prot...		Lus10023030 [exp]	23.0	0.5965
AT4G17880	bHLH	bHLH004, MYC4	Basic helix-loop-helix (bHLH) ...		Lus10000484 [exp]	24.1	0.6286
AT4G19390			Uncharacterised protein family...		Lus10037258 [exp]	40.8	0.6151
AT1G55290			2-oxoglutarate (2OG) and Fe(II...		Lus10036082 [exp]	47.3	0.5778
AT3G59040			Tetratricopeptide repeat (TPR)...		Lus10005058 [exp]	47.5	0.5604
AT3G04310			unknown protein		Lus10032791 [exp]	50.8	0.5647
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10009072 [exp]	56.1	0.5541

Compare expression of checked genes

Lus10005095 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.