Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G102200 [exp] 54 / 4e-09 ND / Potri.004G112600 [exp] 46 / 2e-06 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005096 pacid=23171472 polypeptide=Lus10005096 locus=Lus10005096.g ID=Lus10005096.BGIv1.0 annot-version=v1.0 ATGGTACTGCAAATGAAGTTTGTAGGGATGCTGCTGGGGCTTCTCTTCATCATGAATGCCCTGCGAGACTATTATGCTTTTGCTCACCACGATATGGAAG TGAGAACCAATAATGATCAGATGGCGGTGCCTGCAGTTACTACTTCTGCACAAAATCATCATAAGGAACTTGGAGGAAGGAAAATGGTGGCGATGAAGAA GAAGAAGAAAGAAGGGTATCATGCAGGCAAACATGATCAAGTGGTGAACCCTTCTGCTGCAGCAGCAGCAGCTTACTATAAGAAGGAAAGGTACAGGTGG AAGGCGTTTAGAAAAGATGGAGAAGAAGAAGAGGAGGAGAGCAGCAATAGTAAGAGGCTAATGGAGGAAACAAGGAAGATAGTAGCTCTGATGCATAGAG ACTACAAAGGAATGAACAAGCCTCGCCGCAAACCACCCATCAACAACCATCTCCCCATTCACTGA
AA sequence Show only first row Show all	>Lus10005096 pacid=23171472 polypeptide=Lus10005096 locus=Lus10005096.g ID=Lus10005096.BGIv1.0 annot-version=v1.0 MVLQMKFVGMLLGLLFIMNALRDYYAFAHHDMEVRTNNDQMAVPAVTTSAQNHHKELGGRKMVAMKKKKKEGYHAGKHDQVVNPSAAAAAAYYKKERYRW KAFRKDGEEEEEESSNSKRLMEETRKIVALMHRDYKGMNKPRRKPPINNHLPIH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10005096 [exp]	0	1
AT2G12646			PLATZ transcription factor fam...		Lus10039989 [exp]	1.0	0.9634
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10032282 [exp]	3.5	0.9487
AT2G12646			PLATZ transcription factor fam...		Lus10008814 [exp]	5.2	0.9438
AT3G10120			unknown protein		Lus10027167 [exp]	5.7	0.9393
AT5G10130			Pollen Ole e 1 allergen and ex...		Lus10014332 [exp]	6.3	0.9142
AT2G45240		MAP1A	methionine aminopeptidase 1A (...		Lus10001650 [exp]	8.7	0.8961
AT2G17080			Arabidopsis protein of unknown...		Lus10025120 [exp]	9.2	0.9294
AT2G17080			Arabidopsis protein of unknown...		Lus10025125 [exp]	10.0	0.9075
AT1G05030			Major facilitator superfamily ...		Lus10030010 [exp]	10.4	0.9130
AT2G14210	MADS	AGL44, ANR1	ARABIDOPSIS NITRATE REGULATED ...		Lus10028214 [exp]	10.9	0.9261

Compare expression of checked genes

Lus10005096 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.