Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15700 1265 / 0 DNA/RNA polymerases superfamily protein (.1.2) AT1G68990 1235 / 0 MGP3 male gametophyte defective 3 (.1.2) AT2G24120 1142 / 0 PDE319, SCA3 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034355 [exp] 1870 / 0 AT2G24120 1276 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Lus10031952 [exp] 1424 / 0 AT5G15700 1274 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Lus10035150 [exp] 1424 / 0 AT5G15700 1273 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Lus10019208 [exp] 1196 / 0 AT1G68990 1245 / 0.0 male gametophyte defective 3 (.1.2) Lus10036844 [exp] 1168 / 0 AT1G68990 1244 / 0.0 male gametophyte defective 3 (.1.2) Lus10022181 [exp] 1100 / 0 AT2G24120 1300 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Lus10010771 [exp] 666 / 0 AT2G24120 814 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Lus10010770 [exp] 413 / 6e-137 AT2G24120 464 / 2e-157 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Lus10019207 [exp] 44 / 0.0004 AT1G68990 73 / 1e-14 male gametophyte defective 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G111600 [exp] 1377 / 0 AT5G15700 1326 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Potri.017G105801 [exp] 1348 / 0 AT5G15700 1331 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Potri.010G136700 [exp] 1315 / 0 AT1G68990 1248 / 0.0 male gametophyte defective 3 (.1.2) Potri.008G112800 [exp] 1308 / 0 AT1G68990 1269 / 0.0 male gametophyte defective 3 (.1.2) Potri.018G103300 [exp] 1150 / 0 AT2G24120 1381 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Potri.006G181100 [exp] 1131 / 0 AT2G24120 1359 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00940 [flax] [poplar] RNA_pol DNA-dependent RNA polymerase
Representative CDS sequence Show only first row Show all	>Lus10005097 pacid=23171457 polypeptide=Lus10005097 locus=Lus10005097.g ID=Lus10005097.BGIv1.0 annot-version=v1.0 ATGTGGAGAAACGGAGCCAAACGAGCCATTTCTAGAACTCAGAGAAAAGCATTGACCTCCGCCACTTCATTTTCTCCTCTCCCAAATATTTCCAGCTTCC ATATCCTTCTTCCCGGCCAGGGTTTTACTAAGAAATCGAAACTCTATCCGGCTAATGTATCGAATCTGCCGCACCAGATTCTCTGCTCCAGAGTTGGAAT TTTGCGTAGAGGATTCTATTGTGGTGGATTTTGCACGAGAGCTTTCGCGACTGTAGCAGAGGCAGTTCCATCGTCCACGGACGTAGAAGAGGAGGAGTCA TTTGCGGAGGAAGTGCAGGAATTGGTGGGGGAAATGCAGAAGGAACGGCGGAGAGAAACTGCGAGGAAGAGATGGCAAAGAATAGCACCTCCTGGGATGG GTTGGAGGAGGTATGAGGCGTTAAAGAGACGGCAGGTTCAAATCGAGACGGAAGCTTGGGAAAGGGCGGCAAACGAGTACAGGGAACTTCTCAAGGATAT GTGCGAGCAAAAGTTGGCTCCTAATCTGCCTTACGTGAAAGGATTGTTCCTTGGGTGGTTCGAGCCCTTGAGGGATGCAATCCTGAAAGAGCAGGAGTTA ATCGGTAAAGGCAAGTGCAGAGGTGCCTATGCTCCATATTTGCATCACTTGCCTGCTGATATGATGTGTGTTATCACAATGCATAAGCTGATGAGCCTGA TGATGACATATGGTGAGCATGGTTCTGCTAAGGTTGTTCCTACTGCAATTGCTATTGGTGATGCCATTGAACAGGAGATTAGAATACACAATTTCTTGGA GAAAACGAAGAGGAAAAAGAAGGCCAAAGTTGAGAAAAGTGGAGAAGGCGATGAATCTGCTGGGGAGCAATTGATGTTGAGAAGAAAGGTCACGGAACTG ATAAAGAAAAAGAAGTTGCCAGTTGTTAGAAAAATTATGAAAGCTTATGATGATTCAAGACCTTGGAGCCAGGAAGCTAAAGCTAAAGTGGGGAGCCATC TAATCGAATTACTCATAAAAACTGCATATATTCAAGCTCCTGTCAATCAACTATGCGATAGTCCTCCTGATATCCGACCAGCATTTACACATACTATGTT GACTATCACAAGAGAGGATAAGAAGACAAGTAGAAGATATGGTGTCATTAAAACTGATCCGGTAGTCCTTAAAGGACTTGAGAGAAGTGCAAGGCACATG GTGATCCCTTACATGCCAATGTTGGTGCCTCCAGTCAAGTGGATGGGATATGACACAGGAGCTTACTTTTTCCTACCTTCCTACATCATGCGCACTCATG GGTCCAGACAACAACGTGACACAGTGAAAGTTGCCTCTAGGGCACAACTAGAGCAAGTGTTTGAGGCCCTGGATACACTTGGAAGTACTAAATGGAGGGT AGATAAAAGGGTACTTAATATTGTAGATAGACTTTGGAACAGTGGAGGCCGTCTTGGTCATTTGGTGGATCGAAATGATGTTCCTTTGCCAGAGAAGCCA GATACAGAAGATGAAAATTTACTAAAGAAATGGAAATGGAAAGTGAGAAACGGAAAAAAAGAGAATCGGGAGAGGCATTCCCTCCGCTGTGATACAGAAC TAAAACTTTCTGTAGCACGGAAAATGAAGGAGGAAGAAGGATTTTATTATCCACATAATGTTGATTTTCGGGGACGTGCATACCCAATGCATCCATACTT GAACCATCTCGGTTCAGATATGTGTCGAGGTATTTTGGAGTTCGGAGAAGGTCGTCCTCTTGGAAACTCGGGTTTGAAATGGTTGAAGATACACCTGGCG AACCTATTCGCTGGCGGCGTGGATAAGTTATCACATGAAGGTCGGATAAGCTTTACTGAGAATCATTTGGAAGACATATTTGATTCTGTGGACAAGCCAC TGGAAGGACGCCGCTGGTGGTTGCATGCGGAAGATCCATTCCAGTGCTTGGCAGCTTGTATTAATCTTACTGAAGCATTGAGAAGTCCCTCTCCGGAGAC CTATGTCTCACATCTTCCAATTCATCAGGATGGCTCATGCAATGGGTTACAACATTATGCAGCACTTGGGAGGGATAAGTTAGGAGCAGCTGCTGTTAAT TTGGTCGGAGGAGAAAAACCAGCAGATGTCTACTCTGGTATAGCGGCAAGAGTTCTTGATATCATGCGGAAGGATGCACAGAGAGATTCTGCAAGCTTTC CCGATGCTCTATGGGCAAGAGCTTTACTTAACCAGGTGGATCGGAAATTGGTGAAGCAGACAGTGATGACATCTGTATATGGTGTTACTTACATTGGTGC CAGAGATCAAATCCTGAAAAGGTTGAAAGAGCGAGGCACCGGATTGGATCAAACAGAGGCTTTTGCCGCTTCTTGTTATGCAGCTAAAGTGACATTAACT GGACTGGAGGAGATGTTTGAAGCTGCTCGGAGTATAATGAGCTGGCTGGGTGAATGCGCAAAGATTATTGCATCACAAAACCAAGCAGTAAAATGGACAA CCCCACTTGGACTTCCTGTGGTACAACCTTACAGGAAACTCGGGCGGCTTCTTATCAAAACATCCCTCCAGGTCTTAACGCTACAAAGGGAAACCGAAAA GGTCATGGTGAAGAGGCAAAAAACAGCATTTCCACCAAATTTTGTTCACTCCTTGGATGGTTCACATATGATGATGACTGCTATTGCTTGCAGAAAGGCA GGATTAAACTTTGCAGGTGTCCATGATTCGTTCTGGACTCACGCATGTGATGTGGATCAAATGAACATGATACTTAGAGAGAAGTTTGTTGAACTCTATG AAGCCCCGATACTAGAGAATCTGTTGGAGAGCTTTGAGCAGTCGTTTCCTAATTCACCGTTTCCCCCTTTGCCAGAAAGAGGAGATTTTGATTTGAGAGA GGTTTTGCAGTCGACATACTTTTTCAACTAG
AA sequence Show only first row Show all	>Lus10005097 pacid=23171457 polypeptide=Lus10005097 locus=Lus10005097.g ID=Lus10005097.BGIv1.0 annot-version=v1.0 MWRNGAKRAISRTQRKALTSATSFSPLPNISSFHILLPGQGFTKKSKLYPANVSNLPHQILCSRVGILRRGFYCGGFCTRAFATVAEAVPSSTDVEEEES FAEEVQELVGEMQKERRRETARKRWQRIAPPGMGWRRYEALKRRQVQIETEAWERAANEYRELLKDMCEQKLAPNLPYVKGLFLGWFEPLRDAILKEQEL IGKGKCRGAYAPYLHHLPADMMCVITMHKLMSLMMTYGEHGSAKVVPTAIAIGDAIEQEIRIHNFLEKTKRKKKAKVEKSGEGDESAGEQLMLRRKVTEL IKKKKLPVVRKIMKAYDDSRPWSQEAKAKVGSHLIELLIKTAYIQAPVNQLCDSPPDIRPAFTHTMLTITREDKKTSRRYGVIKTDPVVLKGLERSARHM VIPYMPMLVPPVKWMGYDTGAYFFLPSYIMRTHGSRQQRDTVKVASRAQLEQVFEALDTLGSTKWRVDKRVLNIVDRLWNSGGRLGHLVDRNDVPLPEKP DTEDENLLKKWKWKVRNGKKENRERHSLRCDTELKLSVARKMKEEEGFYYPHNVDFRGRAYPMHPYLNHLGSDMCRGILEFGEGRPLGNSGLKWLKIHLA NLFAGGVDKLSHEGRISFTENHLEDIFDSVDKPLEGRRWWLHAEDPFQCLAACINLTEALRSPSPETYVSHLPIHQDGSCNGLQHYAALGRDKLGAAAVN LVGGEKPADVYSGIAARVLDIMRKDAQRDSASFPDALWARALLNQVDRKLVKQTVMTSVYGVTYIGARDQILKRLKERGTGLDQTEAFAASCYAAKVTLT GLEEMFEAARSIMSWLGECAKIIASQNQAVKWTTPLGLPVVQPYRKLGRLLIKTSLQVLTLQRETEKVMVKRQKTAFPPNFVHSLDGSHMMMTAIACRKA GLNFAGVHDSFWTHACDVDQMNMILREKFVELYEAPILENLLESFEQSFPNSPFPPLPERGDFDLREVLQSTYFFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15700			DNA/RNA polymerases superfamil...		Lus10005097 [exp]	0	1
AT4G39160	MYB		Homeodomain-like superfamily p...		Lus10040429 [exp]	2.4	0.8363
AT5G08610		PDE340	PIGMENT DEFECTIVE 340, P-loop ...		Lus10010127 [exp]	4.2	0.8653
AT1G52980		AtNug2	nuclear/nucleolar GTPase 2, GT...		Lus10023835 [exp]	7.9	0.8501
AT1G48310		CHR18, CHA18	chromatin remodeling factor18 ...		Lus10039409 [exp]	8.7	0.8097
AT5G52950			unknown protein		Lus10039318 [exp]	13.6	0.7971
AT1G67630		EMB2814, POLA2	EMBRYO DEFECTIVE 2814, DNA pol...		Lus10015820 [exp]	14.0	0.8577
AT3G15460			Ribosomal RNA processing Brix ...		Lus10019857 [exp]	14.6	0.7834
AT3G18524		ATMSH2, MSH2	MUTS homolog 2 (.1)		Lus10042967 [exp]	24.3	0.8402
AT1G06720			P-loop containing nucleoside t...		Lus10013507 [exp]	25.3	0.8390
AT4G31770		ATDBR1	ARABIDOPSIS THALIANA DEBRANCHI...		Lus10020096 [exp]	27.3	0.7767

Compare expression of checked genes

Lus10005097 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.