Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38840 606 / 0 FHA SMAD/FHA domain-containing protein (.1) AT5G47790 87 / 3e-18 FHA SMAD/FHA domain-containing protein (.1) AT3G20550 78 / 3e-15 FHA DDL DAWDLE, SMAD/FHA domain-containing protein (.1) AT1G34355 59 / 1e-08 FHA ATPS1 PARALLEL SPINDLE 1, forkhead-associated (FHA) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034354 [exp] 1159 / 0 AT5G38840 629 / 0.0 SMAD/FHA domain-containing protein (.1) Lus10003911 [exp] 91 / 3e-19 AT5G47790 403 / 4e-139 SMAD/FHA domain-containing protein (.1) Lus10001916 [exp] 89 / 2e-18 AT5G47790 395 / 3e-136 SMAD/FHA domain-containing protein (.1) Lus10004278 [exp] 78 / 6e-15 AT3G20550 320 / 2e-108 DAWDLE, SMAD/FHA domain-containing protein (.1) Lus10019235 [exp] 72 / 4e-13 AT3G20550 296 / 5e-99 DAWDLE, SMAD/FHA domain-containing protein (.1) Lus10006070 [exp] 56 / 1e-07 AT1G34355 234 / 7e-62 PARALLEL SPINDLE 1, forkhead-associated (FHA) domain-containing protein (.1) Lus10009434 [exp] 53 / 9e-07 AT1G34355 233 / 1e-61 PARALLEL SPINDLE 1, forkhead-associated (FHA) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G111500 [exp] 791 / 0 AT5G38840 342 / 1e-106 SMAD/FHA domain-containing protein (.1) Potri.006G003100 [exp] 89 / 2e-18 AT5G47790 412 / 9e-143 SMAD/FHA domain-containing protein (.1) Potri.016G003800 [exp] 85 / 3e-17 AT5G47790 430 / 5e-150 SMAD/FHA domain-containing protein (.1) Potri.001G420400 [exp] 80 / 1e-15 AT3G20550 298 / 4e-99 DAWDLE, SMAD/FHA domain-containing protein (.1) Potri.011G136102 [exp] 74 / 4e-14 AT3G20550 226 / 8e-73 DAWDLE, SMAD/FHA domain-containing protein (.1) Potri.013G114700 [exp] 61 / 2e-09 AT1G34355 299 / 5e-84 PARALLEL SPINDLE 1, forkhead-associated (FHA) domain-containing protein (.1) Potri.009G156700 [exp] 43 / 0.0002 AT2G21530 135 / 4e-40 SMAD/FHA domain-containing protein (.1) Potri.009G156900 [exp] 42 / 0.0005 AT2G21530 146 / 5e-44 SMAD/FHA domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0357 [flax] [poplar] SMAD-FHA PF00498 [flax] [poplar] FHA FHA domain
Representative CDS sequence Show only first row Show all	>Lus10005098 pacid=23171484 polypeptide=Lus10005098 locus=Lus10005098.g ID=Lus10005098.BGIv1.0 annot-version=v1.0 ATGACGAGTGCCATGGGTCCTCCACATCCTAGGAACCCTAATCCTACCGAGCAGACTACCTCCGGCGACGAACCGCCACTTAAAACCGTCGATGGCGGTG GAGATCCAACTCCTCCATCTGAATCACGAACTGCGATGGGTCCGCCTGTGCCCCGAGAGAACAATGAATCTATTGAGCAAAAACCTCAATCCGAAGTCAA GGTGAGCTCTGATGCAGCGGATGCAGCTGAGCAAGCCAACAAGCGATCGGCTGCGGTGCCCTATACCATTCCCGAGTGGAGTGGCCCTCCTTGCCATAAA TTCAACCTGGAGGTTCTCAAAGATGGCTCCATTATCGACCAATTCGAAGTCTTCCAGAAGGGAGCTTACATGTTTGGGCGTGTGGATCTCTGTGACTTCG TTCTTGAGCACCCAACTGTCTCCCGCTTTCATGCAGTTTTGCAGTTTAAAAGAAGTGGAGATGCATACATCTATGATGTAGGAAGCACTCACGGTACTTT TATTAACAAGAGCCAGGTGGAGAAAAGAGTTTACGTCGCTGTACACGTGGGTGATGTCATCCGATTTGGCCAGTCATCTCGATTATACATTTTTCAAGGA CCTCAAGACCTGATGCCTCCGGAAGCGCACCGCAACGTCCTTAAAAATGCCAGGGCCCAGCAAGATATGCTAGATCGAGAAGCTTCGCTTCACCGAGCAA GAATGGAATCTTCTCTTGCTGATGGTATCTCCTGGGGAATGGATGAAGATGCTATTGAAGAAGCCGATGATGATACTGATGAAATAACTTGGCAAACCTA CAAAGGGAAGCTCACGGAGAAGCAAGAAAAGACACGTGATAAAGTCGTTAAACGAAATGAGAAGATTGCTCATATGAGGAAAGAAATAGATGCTATTCGT GCCAAAGACATTTCTCAAGGTGGGTTAACACAAGGGCAGCAAACACAGATAGCTCGCAATGATTTAAGAATAACTCAGCTGATGGAAGAGCTGGAAAGCT TGGAGGAGACTTTAAATGAAAGTATCCGTGAAAGCCTTGGTGCACGCTCAGGAAGGAGTTACGGGGGCAAAAAAGGAGCAGCAGAAGAGGAACAATATTC AAGTGACGAAGATGATTTTTACGACCGGACAAAGAATCCTCTTAGAAAAAAGGCTGGGGAATCTCAATCAGTTGAGACTGCGGATAGCTTGCTTGATAAG AGAGATGCTATAATGAAAGAGATGCAAGATAAAAAAGACTTGTTTCTCCTTGAGAATAATAAAGTCACATCTGAAACTGATGCAGAACCTGAAGCTACAG ATGAACTTGATGCTTATATGTCTGGACTATCATCCCAGCTAGTCATTGACAAGACTCAAAAGCTTGAGAAGGAGCTAGCTGGCCTTCAATCTGAACTAGA TAGAATCATTTACCTATTGAAGATTGCGGATCCCTCGGGCGAGTTTGCTAAGAAAAGGGAATTGAAGACGCAGGGTAAAATACCTGATATTCCTAAAACA GAAGTATCTCCTGCTTCAAGTGAAACTCACCTTCCCGAGGTGCTGAAAAAAGGTAATAAGTTGGATAAGGCTATCGATCGGCCATCTTGTAAAGCTAAGG ACAGTAATGCCGCTCCAGTGCAATCAAACACCAGAGAAGAAGCAGACAAGATTGTTGGCGATGCTCCTGTGGTGAAAGCGACACCTTATGTTCCTGCAAA ACCCCAATGGCTTGGTGCTGTCAGTGACAAGGAAGTGAAAGAGATCGTACAAGAAGTTGTCTTGCCCAAGGCTGATGAGTCCGACCAGTTCGTGGATTAC AAGGACAGGCAGAAAATTTTTCATAATGCTGATGGAATTGAAGGTGTCAAATCCGGCCTTATCATAAGGAAGCGTAAAGAAATTGAGAGTAGAGGAGACG GTGATAGGGAGGCTACTGAGCAGCCAGCATCAGCAGAGTTCAAGGCAGAGGATGCAATTGCTTTGTTACTGAAACACGAAAAGGGATACCATTTGGAAGA AGAGGAAGCACAACATGAAAGCCAAGTGGCCTCTGATGTTAGCCAAGGTAACAACGATACCAAAAGGCCCAAAAGAGTTCTTGGTCCCCAGAAACCATCG TTTCTTCAGGGGGAGTCTGAAAAGGATTTATGGATGCCACCTGAAGGCCAATCTGGCGACGGACGGACGTCACTAAATGAAAGATTCGGATACTAA
AA sequence Show only first row Show all	>Lus10005098 pacid=23171484 polypeptide=Lus10005098 locus=Lus10005098.g ID=Lus10005098.BGIv1.0 annot-version=v1.0 MTSAMGPPHPRNPNPTEQTTSGDEPPLKTVDGGGDPTPPSESRTAMGPPVPRENNESIEQKPQSEVKVSSDAADAAEQANKRSAAVPYTIPEWSGPPCHK FNLEVLKDGSIIDQFEVFQKGAYMFGRVDLCDFVLEHPTVSRFHAVLQFKRSGDAYIYDVGSTHGTFINKSQVEKRVYVAVHVGDVIRFGQSSRLYIFQG PQDLMPPEAHRNVLKNARAQQDMLDREASLHRARMESSLADGISWGMDEDAIEEADDDTDEITWQTYKGKLTEKQEKTRDKVVKRNEKIAHMRKEIDAIR AKDISQGGLTQGQQTQIARNDLRITQLMEELESLEETLNESIRESLGARSGRSYGGKKGAAEEEQYSSDEDDFYDRTKNPLRKKAGESQSVETADSLLDK RDAIMKEMQDKKDLFLLENNKVTSETDAEPEATDELDAYMSGLSSQLVIDKTQKLEKELAGLQSELDRIIYLLKIADPSGEFAKKRELKTQGKIPDIPKT EVSPASSETHLPEVLKKGNKLDKAIDRPSCKAKDSNAAPVQSNTREEADKIVGDAPVVKATPYVPAKPQWLGAVSDKEVKEIVQEVVLPKADESDQFVDY KDRQKIFHNADGIEGVKSGLIIRKRKEIESRGDGDREATEQPASAEFKAEDAIALLLKHEKGYHLEEEEAQHESQVASDVSQGNNDTKRPKRVLGPQKPS FLQGESEKDLWMPPEGQSGDGRTSLNERFGY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38840	FHA		SMAD/FHA domain-containing pro...		Lus10005098 [exp]	0	1
AT3G20475		ATMSH5	MUTS-homologue 5 (.1)		Lus10021545 [exp]	2.0	0.8893
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10012517 [exp]	3.9	0.8489
AT1G13940			Plant protein of unknown funct...		Lus10030419 [exp]	5.7	0.8541
AT1G14790		ATRDRP1, RDR1	RNA-dependent RNA polymerase 1...		Lus10019164 [exp]	7.5	0.8298
AT5G28770	bZIP	BZO2H3, ATBZIP6...	Arabidopsis thaliana basic leu...		Lus10006590 [exp]	13.3	0.8201
AT4G16130		ATISA1, ARA1	arabinose kinase (.1)		Lus10020178 [exp]	14.4	0.8390
AT4G36630		EMB2754	EMBRYO DEFECTIVE 2754, Vacuola...		Lus10026018 [exp]	14.9	0.8298
AT5G10200			ARM-repeat/Tetratricopeptide r...		Lus10029573 [exp]	15.9	0.8090
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10011137 [exp]	15.9	0.8234
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Lus10015341 [exp]	19.5	0.8354

Compare expression of checked genes

Lus10005098 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.