Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20330 259 / 2e-86 Transcription initiation factor TFIIE, beta subunit (.1) AT4G21010 212 / 4e-68 Transcription initiation factor TFIIE, beta subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002233 [exp] 258 / 1e-85 AT4G20330 277 / 3e-93 Transcription initiation factor TFIIE, beta subunit (.1) Lus10029563 [exp] 255 / 1e-84 AT4G20330 273 / 2e-91 Transcription initiation factor TFIIE, beta subunit (.1) Lus10034352 [exp] 0 / 1 ND 38 / 3e-07
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G107500 [exp] 327 / 4e-113 AT4G20330 351 / 2e-122 Transcription initiation factor TFIIE, beta subunit (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005100 pacid=23171488 polypeptide=Lus10005100 locus=Lus10005100.g ID=Lus10005100.BGIv1.0 annot-version=v1.0 ATGGCACTTCAAGAGCAACTTGTTAAATTCAAGAAGCAGCAAGAAAAGATGCATTCAATGATCAGCAGCATTGCACCGAAAGCAGGACCTTCAAAATCAC TTCCAGCTTCAAAATCTGCCAAGGCTCCGGTTCCGGCTGTCAAGTTTTCAAATGATACAGAGAGGCTTCAGCATATCCACAACATTCGGAAGGCTCCCGT GGGATCACAGATGAAGCGTGTTATAGACCTCTTGTTTGAGACGAGGCAAGCCCTCACTGCAAATCAAATAAATGAAGCCTGTCATGTGGATGTCAACTCC AATAAGGCTGTCTTTGAGAGTCTGAAGAACAATGTGAAAGTGAACTATGATGGAAGATATTTCTCCTACAAGTCAAAGCATGACTTGAAGGACAAGAAGC AACTGCTTGACTTGATAAAACAATTTCCGGAGGGAATTCCTGTTATCGATCTCAAGGATGCATACCCTACTGTGATGGAGGATCTACAGGCTCTGAAAGC TGCACGGCAGATTTGGCTGTTATCAAACTTGGACTCTAAGGAGGATATCGCCTATCCTAACGATCCTAAGACGTCGATTACTGTGGATGACAACCTTAAA CAGCTATTCAAGGGGATCGAATTGCCTGGTGATATGCTGACCATCGAGAAGGAGCTGCAGAAGAACGGAATGAAGCCTGCTACAAACACTGCAATGAGAC GAGCTGCAGCTCAGATTCAAGGAATTTATAGGAAGCCAAAGACCAAGAAGAAGAAACGCGAGATGAACAAGAGATCTAAGCTCACTAATTTTCATCTTCC AGAGCTTTTTGAGCATCTTGGCTCTTAA
AA sequence Show only first row Show all	>Lus10005100 pacid=23171488 polypeptide=Lus10005100 locus=Lus10005100.g ID=Lus10005100.BGIv1.0 annot-version=v1.0 MALQEQLVKFKKQQEKMHSMISSIAPKAGPSKSLPASKSAKAPVPAVKFSNDTERLQHIHNIRKAPVGSQMKRVIDLLFETRQALTANQINEACHVDVNS NKAVFESLKNNVKVNYDGRYFSYKSKHDLKDKKQLLDLIKQFPEGIPVIDLKDAYPTVMEDLQALKAARQIWLLSNLDSKEDIAYPNDPKTSITVDDNLK QLFKGIELPGDMLTIEKELQKNGMKPATNTAMRRAAAQIQGIYRKPKTKKKKREMNKRSKLTNFHLPELFEHLGS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20330			Transcription initiation facto...		Lus10005100 [exp]	0	1
AT1G10890			unknown protein		Lus10043141 [exp]	8.0	0.8111
AT1G79860		ATROPGEF12, ROP...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10038560 [exp]	12.7	0.7768
AT4G31720		STG1, TAFII15, ...	TBP-ASSOCIATED FACTOR 10, SALT...		Lus10005077 [exp]	17.0	0.7996
AT2G45620			Nucleotidyltransferase family ...		Lus10009310 [exp]	17.4	0.7776
AT1G12400			Nucleotide excision repair, TF...		Lus10000383 [exp]	21.8	0.7450
AT5G64680			unknown protein		Lus10011265 [exp]	25.2	0.7861
AT4G04614			unknown protein		Lus10014685 [exp]	26.5	0.7612
AT1G55520		ATTBP2, TBP2	A. THALIANA TATA BINDING PROTE...		Lus10020260 [exp]	27.5	0.7473
AT5G47890			NADH-ubiquinone oxidoreductase...		Lus10030922 [exp]	29.9	0.7890
AT1G65420		NPQ7	NONPHOTOCHEMICAL QUENCHING 7, ...		Lus10027674 [exp]	30.6	0.7674

Compare expression of checked genes

Lus10005100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.