Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11390 91 / 2e-21 WIT1 WPP domain-interacting protein 1 (.1) AT1G68910 76 / 2e-16 WIT2 WPP domain-interacting protein 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034351 [exp] 322 / 4e-107 AT5G11390 444 / 1e-146 WPP domain-interacting protein 1 (.1) Lus10029109 [exp] 69 / 1e-13 AT1G68910 487 / 1e-166 WPP domain-interacting protein 2 (.1.2.3) Lus10013053 [exp] 62 / 2e-11 AT1G68910 485 / 5e-166 WPP domain-interacting protein 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G106400 [exp] 106 / 9e-27 AT5G11390 510 / 2e-172 WPP domain-interacting protein 1 (.1) Potri.010G135900 [exp] 75 / 7e-16 AT1G68910 473 / 8e-161 WPP domain-interacting protein 2 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005101 pacid=23171452 polypeptide=Lus10005101 locus=Lus10005101.g ID=Lus10005101.BGIv1.0 annot-version=v1.0 ATGGCTGCTTACGAGACTAGTGATCTTCCTAGTGATATTGACAATAGCTTGGAAATGATTGAGGAAATGCCCTCGGATGGGGAGACGACAGAGGACTTGG GAACTCCTGAGGATACTCTGACTCGAGTGCAGTTGGATTTGGCTTATGCGGATGAGAAGTTGCAGAATTTAAGTTTGTTCTCGATGCAAGTGGCAAACAG GGAAGGTGACTTTGAAGCCTTTGTTACAGCATCAGATGGAGATGTTTTAGCATCGGCAGGAAAGGCTTTGGAATTCGATCTTTTATCTGGGATTTTGGAA TCCGTGGTATCCGAGGTGGATCTATACCTGGCAACCTTACAAACTGATATAGCTGATGTTAGTAATATACTGTCTTCTTGTAAAGAATTGGGAGGTATAT CGTTTGCGCTGGAAGAGAAGTTGCAAGATTGCGAGGAATTATTCAAAGAGGTGCAAGATCAAGTTTCAGCCATTTTGGTGCGGTCTTCAGAATTCGGAAG GATCTTATCATCTGCTCAAGGAAAATCAACTGGTAATCTGTTGGTCCAATTTGATTGA
AA sequence Show only first row Show all	>Lus10005101 pacid=23171452 polypeptide=Lus10005101 locus=Lus10005101.g ID=Lus10005101.BGIv1.0 annot-version=v1.0 MAAYETSDLPSDIDNSLEMIEEMPSDGETTEDLGTPEDTLTRVQLDLAYADEKLQNLSLFSMQVANREGDFEAFVTASDGDVLASAGKALEFDLLSGILE SVVSEVDLYLATLQTDIADVSNILSSCKELGGISFALEEKLQDCEELFKEVQDQVSAILVRSSEFGRILSSAQGKSTGNLLVQFD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11390		WIT1	WPP domain-interacting protein...		Lus10005101 [exp]	0	1
AT5G03280		CKR1, PIR2, ORE...	ORESARA 3, ORESARA 2, ENHANCED...		Lus10026516 [exp]	2.0	0.8588
AT1G06890			nodulin MtN21 /EamA-like trans...		Lus10009918 [exp]	3.2	0.8478
AT5G50390		EMB3141	EMBRYO DEFECTIVE 3141, Pentatr...		Lus10013389 [exp]	4.2	0.8550
AT1G77680			Ribonuclease II/R family prote...		Lus10028065 [exp]	8.1	0.8343
AT5G03280		CKR1, PIR2, ORE...	ORESARA 3, ORESARA 2, ENHANCED...		Lus10013803 [exp]	10.2	0.8380
AT5G28850			Calcium-binding EF-hand family...		Lus10032772 [exp]	13.3	0.8522
AT3G29320		PHS1	alpha-glucan phosphorylase 1, ...		Lus10029643 [exp]	13.4	0.8507
AT5G28850			Calcium-binding EF-hand family...		Lus10008193 [exp]	16.9	0.8188
AT3G44330			unknown protein		Lus10013307 [exp]	20.9	0.8406
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Lus10019088 [exp]	24.5	0.8313

Compare expression of checked genes

Lus10005101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.