Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11390 203 / 3e-58 WIT1 WPP domain-interacting protein 1 (.1) AT1G68910 150 / 7e-40 WIT2 WPP domain-interacting protein 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034351 [exp] 649 / 0 AT5G11390 444 / 1e-146 WPP domain-interacting protein 1 (.1) Lus10029109 [exp] 156 / 9e-42 AT1G68910 487 / 1e-166 WPP domain-interacting protein 2 (.1.2.3) Lus10013053 [exp] 154 / 4e-41 AT1G68910 485 / 5e-166 WPP domain-interacting protein 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G106400 [exp] 305 / 1e-96 AT5G11390 510 / 2e-172 WPP domain-interacting protein 1 (.1) Potri.010G135900 [exp] 184 / 1e-51 AT1G68910 473 / 8e-161 WPP domain-interacting protein 2 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005102 pacid=23171469 polypeptide=Lus10005102 locus=Lus10005102.g ID=Lus10005102.BGIv1.0 annot-version=v1.0 ATGGATGAAGAGGCAACAGATGTTTGGGAAAGGTGTTTTGCAGCAGAAAATGCTTCCGAGATCCTGATGGCAATCGCTAAAGAGTTACTGGGTCGGCTCC AAGTTGTACAATTCCATTTGAGTTGCTCAAGTCAAAGGGAAGCGCATCTGAAATCAAGGCTTAAAGAATCTTCAGATCAGCTAGATGCTAAAGAACAGTC TTTGCAGAAGTTTAATAGCAGTAGTTCGAAAAAGAACGACTTCCTGTTAGCTCAGAGTGATAGTCTGAAAGATAAGTTGGCTGACGCTGAGGACAAATTA GTACTTGCCAATTCCCAGGTCTTCACACTTGGTGACAAGGTTTGCTTGCTTGAGAAGCAACTGAAAGAATCCGAGTTTCAGATTCTAAACGTTAAGGAAT CTGAGGACGGATTTCAGGAGGAGCAAAATGCTTTAGATTCCGAAATCACCCAACTTGAGGACCAAAATGAGGAGCTGGAGGGAAAATTAGCGAAAGCAGA AATTAAAGCTGAAAATGCAGAAAAGAAATGCAAGCTACTGACGGAGACAAATATGGAACTGAATGAAGAGATTGACATACTTAAAGAGAAGGCTGAAAAG GTTGATGTGTTAGAAAAGCAGTTGAAGGATTCTGATATCAGGATCCAACATGCGGTGGCTTCCTCTGAAGCTAGTCAGGAGAAGCAAAGTATGTTGTATT CTACAATCCGGGACATGGAGAATTTGATTGAGGATCTGAAGTTGAGAGCTTCGAAAGCCGAAAGTCATGCAGATAGCGCGGAGGATAAATGCATCATACT GTCAGAATCTAACGCTGAATTGAACGAGGAACTGAGTTTTTTGCGGGGTAGACTTGGACGCTTGGAATCGTTTCTGAATCAATCTGAAGAATCGAAATTA GTGACTGTGAAGGGCATCAGCATCCGAAGTAAAGTGATGACGGATTTAGTGATGCAATTGGCTATTGAGAGAGAACGCCTTCATAAGCAGTTTTCATCAC TAGCATCAGAGAATAGAACGCTATTAATGGCCCTGCAGCAGAAAAAGAAGGATCCAAGTGTAAAACCTAGTAATGAGGGTAGACGAAACCACGAAAAGCA TTTGCATCGTGATAGAAAGGAAGCTGGCAAGCCTGCTGATTGTTTAAATGTGCAAGAGACCCGGAAAATGGCGTTGGGTGGTGAAGGAAGCAGCACATCC GAAGTGAGTGATGTAGTTGATGTAGGGGTGTCCAACTTGAAGCAAGTACTGATGGCAGTGGCGGTCCTTATCATTTCAGCAACATTTTACTTCCTTGTAC CAGACAAGCACTAA
AA sequence Show only first row Show all	>Lus10005102 pacid=23171469 polypeptide=Lus10005102 locus=Lus10005102.g ID=Lus10005102.BGIv1.0 annot-version=v1.0 MDEEATDVWERCFAAENASEILMAIAKELLGRLQVVQFHLSCSSQREAHLKSRLKESSDQLDAKEQSLQKFNSSSSKKNDFLLAQSDSLKDKLADAEDKL VLANSQVFTLGDKVCLLEKQLKESEFQILNVKESEDGFQEEQNALDSEITQLEDQNEELEGKLAKAEIKAENAEKKCKLLTETNMELNEEIDILKEKAEK VDVLEKQLKDSDIRIQHAVASSEASQEKQSMLYSTIRDMENLIEDLKLRASKAESHADSAEDKCIILSESNAELNEELSFLRGRLGRLESFLNQSEESKL VTVKGISIRSKVMTDLVMQLAIERERLHKQFSSLASENRTLLMALQQKKKDPSVKPSNEGRRNHEKHLHRDRKEAGKPADCLNVQETRKMALGGEGSSTS EVSDVVDVGVSNLKQVLMAVAVLIISATFYFLVPDKH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11390		WIT1	WPP domain-interacting protein...		Lus10005102 [exp]	0	1
AT4G29430		RPS15AE	ribosomal protein S15A E (.1)		Lus10000975 [exp]	4.0	0.9130
AT5G40080			Mitochondrial ribosomal protei...		Lus10003002 [exp]	4.7	0.9045
AT3G52390			TatD related DNase (.1.2)		Lus10013590 [exp]	7.9	0.8741
AT3G52300		ATPQ	"ATP synthase D chain, mitocho...		Lus10040374 [exp]	8.5	0.8855
AT5G17250			Alkaline-phosphatase-like fami...		Lus10006806 [exp]	12.4	0.8696
AT5G20500			Glutaredoxin family protein (....		Lus10017148 [exp]	12.8	0.8952
AT3G60820		PBF1	N-terminal nucleophile aminohy...		Lus10015867 [exp]	16.2	0.8721
AT2G34520		RPS14	mitochondrial ribosomal protei...		Lus10034657 [exp]	18.0	0.8659
AT1G54740			Protein of unknown function (D...		Lus10035353 [exp]	19.2	0.8499
AT5G11760			unknown protein		Lus10008481 [exp]	19.7	0.8515

Compare expression of checked genes

Lus10005102 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.