Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16000 942 / 0 NIK1 NSP-interacting kinase 1 (.1) AT3G25560 835 / 0 NIK2 NSP-interacting kinase 2 (.1.2.3) AT2G23950 701 / 0 Leucine-rich repeat protein kinase family protein (.1) AT4G30520 684 / 0 SARK SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE, Leucine-rich repeat protein kinase family protein (.1) AT1G60800 678 / 0 NIK3 NSP-interacting kinase 3 (.1) AT5G45780 585 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G71830 554 / 0 ATSERK1, SERK1 somatic embryogenesis receptor-like kinase 1 (.1) AT4G33430 522 / 4e-179 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) AT2G13790 514 / 3e-176 BAK7, BKK1, ATSERK4 BAK1-LIKE 1, BRI1- ASSOCIATED KINASE 7, somatic embryogenesis receptor-like kinase 4 (.1) AT5G10290 479 / 1e-162 leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034350 [exp] 1192 / 0 AT5G16000 1018 / 0.0 NSP-interacting kinase 1 (.1) Lus10034413 [exp] 861 / 0 AT5G16000 937 / 0.0 NSP-interacting kinase 1 (.1) Lus10019145 [exp] 859 / 0 AT5G16000 935 / 0.0 NSP-interacting kinase 1 (.1) Lus10030898 [exp] 750 / 0 AT1G60800 931 / 0.0 NSP-interacting kinase 3 (.1) Lus10030591 [exp] 750 / 0 AT1G60800 929 / 0.0 NSP-interacting kinase 3 (.1) Lus10019963 [exp] 726 / 0 AT2G23950 907 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10015484 [exp] 720 / 0 AT2G23950 910 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10007292 [exp] 572 / 0 AT5G45780 801 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10029241 [exp] 527 / 0 AT5G45780 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G108200 [exp] 1047 / 0 AT5G16000 1006 / 0.0 NSP-interacting kinase 1 (.1) Potri.017G108000 [exp] 1041 / 0 AT5G16000 995 / 0.0 NSP-interacting kinase 1 (.1) Potri.008G110300 [exp] 897 / 0 AT3G25560 918 / 0.0 NSP-interacting kinase 2 (.1.2.3) Potri.010G134100 [exp] 870 / 0 AT3G25560 927 / 0.0 NSP-interacting kinase 2 (.1.2.3) Potri.010G043200 [exp] 742 / 0 AT1G60800 925 / 0.0 NSP-interacting kinase 3 (.1) Potri.008G188800 [exp] 733 / 0 AT1G60800 930 / 0.0 NSP-interacting kinase 3 (.1) Potri.006G179400 [exp] 713 / 0 AT2G23950 889 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G101300 [exp] 692 / 0 AT4G30520 837 / 0.0 SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE, Leucine-rich repeat protein kinase family protein (.1) Potri.004G059100 [exp] 613 / 0 AT5G45780 837 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G068700 [exp] 597 / 0 AT5G45780 819 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10005103 pacid=23171476 polypeptide=Lus10005103 locus=Lus10005103.g ID=Lus10005103.BGIv1.0 annot-version=v1.0 ATGGCGACCGGAGCTACAGCTAGAAGAAGGGATGAAGTTGTGCTAATGGGTTTAGTGGGTTTCTTGAGCTTCTGTTGTGCACATGGGTTGCTGTCTCCCA AAGGCGTAAATTTTGAAGTGCAAGCTTTGATGGGTATAAAGGCTTCTCTTCACGATCCTCATGGTGTTCTTGATAATTGGGATGGTGACGCTGTGGATCC TTGTAGCTGGACTATGGTCACTTGTTCACCGGAGAATCTCGTCATTGGATTGGGGACTCCCAGTCAGAACTTATCTGGAACTCTTTCTCCAAGCATTTCA AACTTGACAAATCTTCAGATTGTGCTCTTGCAGAATAATAACATTACAGGTCCAATTCCAGCAGAGCTAGGGAGGCTTTCAAAACTTCACACACTTGATC TTTCTAATAATTTCTTCGTTGCGAATGTTCCTTCTTCTCTAGGACACTTGAGGAATCTCCAATACATGAGGCTAAATAACAACAGTCTCGTTGGAGAAGT CCCATTGTCCATTGTCAACATGACCCACCTTGTGCTTCTCGACTTGTCCTACAATAATCTGAGTGGCCCCGTGCCTAGATTTCCTGCTAAAACGTTCAGC ATTGTTGGCAATCCTCTCATCTGCCCAACAGGTTCTGAGCCAGAGTGTTTCGGGACGATACTAATGCCAATGTCCATGAACTTGAACGGCACAGAGACTG TTCTCCCTTCTGAAAGACCAAAAAGTCACAAGATGGCAGTTGCCTTGGGCACTAGTGTTGGTGCAGTCTCACTCATCATTATGGTGTTTGGGATGTTCCT ATGGTGGAGGCAAAGGCTTAATCCACCAATGTTTTTTGATGTCAATGACCGACACCATGAAGAAGTTTCCCTTGGAAACTTGAGAAGGTTTCTGTTTAGA GAACTCCAGACTGCAACAGGAAACTTCAGCAACAAAAACATACTAGGGAAAGGAGGCTTTGGCAATGTCTATAAAGGAACTCTCCATGATGGGACAATTG TGGCTGTCAAGAGGTTGAAAGATGGGAGTGCCGCTGGAGGAGAGATTCAGTTCCAGACTGAAGTTGAGATGATCAGCTTAGCAGTGCACAGACACCTCCT CAAGTTGTACGGTTTCTGCATCACATCAACAGAGAGACTATTGGTTTATCCATACATGTCAAATGGCAGCGTTGCTTCCCGTCTCAAGGGTAAGTTGATA TTTAATGCTTTCCACATCCACCGATTGTTGGATTGGAGCACAAGGAAGAAAATAGCGTTAGGAGCTGCTAGGGGACTGTTATACCTCCACGAACAATGTG ATCCGAAGATAATCCACAGGGATGTTAAGGCAGCAAACATATTGCTTGATGACTACTGTGAAGCTGTGGTGGGAGATTTTGGTTTGGCTAAGTTGCTGGA TCACCAAGATTCACATGTAACCACTGCAGTTAGGGGAACTGTTGGCCATATTGCTCCGGAATATCTTTCCACAGGCCAATCTTCAGACAAAACCGACGTG TTTGGATTCGGAATTTTGCTTCTTGAGCTAATCACAGGCCAAAGAGCACTTGAGTTTGGAAAGGCATCTAATCAGAAAGGAGCCATGCTGGACTGGGTAA AGAAAATTCATCAAGAGAAGAAGCTGGACATGATGGTGGACAAGGATTTGAAAGGAAACTACGATACAATTGAGCTTGAGGAGATTGTGAAAGTTGCTCT GCTTTCAACCCAATACCTTCCAAGCCACAGACCAAGGATGTCAGAAGTAGTACGGATGCTGGAAGGGGATGGACTAGCAGAGAGATGGGAAGCTTCGCAG AAAGCAGAAGCAACAAAGTCGAAACATCACGAATTCTCGTCGTCGGATCGGTACTCTGATCTCACTGATGATTCGTCATTGTTGGTACAAGCAATGGAGC TCTCTGGGCCCAGGTGA
AA sequence Show only first row Show all	>Lus10005103 pacid=23171476 polypeptide=Lus10005103 locus=Lus10005103.g ID=Lus10005103.BGIv1.0 annot-version=v1.0 MATGATARRRDEVVLMGLVGFLSFCCAHGLLSPKGVNFEVQALMGIKASLHDPHGVLDNWDGDAVDPCSWTMVTCSPENLVIGLGTPSQNLSGTLSPSIS NLTNLQIVLLQNNNITGPIPAELGRLSKLHTLDLSNNFFVANVPSSLGHLRNLQYMRLNNNSLVGEVPLSIVNMTHLVLLDLSYNNLSGPVPRFPAKTFS IVGNPLICPTGSEPECFGTILMPMSMNLNGTETVLPSERPKSHKMAVALGTSVGAVSLIIMVFGMFLWWRQRLNPPMFFDVNDRHHEEVSLGNLRRFLFR ELQTATGNFSNKNILGKGGFGNVYKGTLHDGTIVAVKRLKDGSAAGGEIQFQTEVEMISLAVHRHLLKLYGFCITSTERLLVYPYMSNGSVASRLKGKLI FNAFHIHRLLDWSTRKKIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSDKTDV FGFGILLLELITGQRALEFGKASNQKGAMLDWVKKIHQEKKLDMMVDKDLKGNYDTIELEEIVKVALLSTQYLPSHRPRMSEVVRMLEGDGLAERWEASQ KAEATKSKHHEFSSSDRYSDLTDDSSLLVQAMELSGPR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16000		NIK1	NSP-interacting kinase 1 (.1)		Lus10005103 [exp]	0	1
AT5G16000		NIK1	NSP-interacting kinase 1 (.1)		Lus10034350 [exp]	1.4	0.7811
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10019391 [exp]	11.2	0.7400
AT5G50020			DHHC-type zinc finger family p...		Lus10020844 [exp]	12.0	0.6908
AT4G14750		IQD19	IQ-domain 19 (.1)		Lus10039366 [exp]	16.0	0.7123
AT4G14750		IQD19	IQ-domain 19 (.1)		Lus10039367 [exp]	16.7	0.7086
AT2G26730			Leucine-rich repeat protein ki...		Lus10001900 [exp]	33.6	0.7013
AT5G35670		IQD33	IQ-domain 33 (.1)		Lus10000919 [exp]	33.9	0.6763
AT2G38180			SGNH hydrolase-type esterase s...		Lus10027790 [exp]	35.2	0.6269
AT2G32580			Protein of unknown function (D...		Lus10029975 [exp]	42.5	0.6650
AT5G53500			Transducin/WD40 repeat-like su...		Lus10011313 [exp]	44.2	0.6001

Compare expression of checked genes

Lus10005103 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.