Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42350 77 / 9e-19 RING/U-box superfamily protein (.1) AT2G42360 75 / 1e-17 RING/U-box superfamily protein (.1) AT5G58580 60 / 6e-12 ATL63 TOXICOS EN LEVADURA 63 (.1) AT4G10150 57 / 3e-11 RING/U-box superfamily protein (.1) AT4G10160 57 / 6e-11 RING/U-box superfamily protein (.1) AT5G05810 56 / 1e-10 ATL43 RING/U-box superfamily protein (.1) AT2G35910 56 / 2e-10 RING/U-box superfamily protein (.1) AT5G06490 55 / 2e-10 RING/U-box superfamily protein (.1) AT2G18650 55 / 4e-10 MEE16 maternal effect embryo arrest 16, RING/U-box superfamily protein (.1) AT2G25409 53 / 5e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002194 [exp] 157 / 6e-50 AT2G42360 153 / 4e-46 RING/U-box superfamily protein (.1) Lus10025338 [exp] 58 / 1e-11 AT4G17905 99 / 4e-25 RING/U-box superfamily protein (.1) Lus10029949 [exp] 58 / 3e-11 AT3G05200 171 / 1e-50 RING/U-box superfamily protein (.1) Lus10006787 [exp] 57 / 5e-11 AT1G49230 159 / 9e-49 RING/U-box superfamily protein (.1) Lus10015167 [exp] 57 / 5e-11 AT3G05200 226 / 2e-71 RING/U-box superfamily protein (.1) Lus10005954 [exp] 57 / 6e-11 AT3G04020 111 / 7e-28 unknown protein Lus10009264 [exp] 56 / 6e-11 AT3G03550 77 / 4e-17 RING/U-box superfamily protein (.1) Lus10024405 [exp] 56 / 8e-11 AT4G17905 95 / 9e-24 RING/U-box superfamily protein (.1) Lus10029456 [exp] 54 / 9e-11 AT5G10380 86 / 3e-21 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G091400 [exp] 90 / 2e-23 AT2G42360 143 / 9e-42 RING/U-box superfamily protein (.1) Potri.011G063100 [exp] 66 / 2e-14 AT2G42350 106 / 3e-28 RING/U-box superfamily protein (.1) Potri.006G144200 [exp] 57 / 2e-11 AT5G17600 90 / 3e-21 RING/U-box superfamily protein (.1) Potri.010G206200 [exp] 57 / 2e-11 AT5G17600 91 / 6e-22 RING/U-box superfamily protein (.1) Potri.008G019000 [exp] 57 / 4e-11 AT5G06490 131 / 8e-39 RING/U-box superfamily protein (.1) Potri.013G025800 [exp] 57 / 9e-11 AT3G05200 261 / 9e-84 RING/U-box superfamily protein (.1) Potri.015G056800 [exp] 57 / 1e-10 AT5G05810 263 / 8e-85 RING/U-box superfamily protein (.1) Potri.001G309600 [exp] 56 / 1e-10 AT1G49230 261 / 6e-89 RING/U-box superfamily protein (.1) Potri.009G073900 [exp] 56 / 2e-10 AT5G58580 102 / 9e-26 TOXICOS EN LEVADURA 63 (.1) Potri.010G010500 [exp] 56 / 2e-10 AT3G16720 202 / 1e-63 TOXICOS EN LEVADURA 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10005104 pacid=23171460 polypeptide=Lus10005104 locus=Lus10005104.g ID=Lus10005104.BGIv1.0 annot-version=v1.0 ATGGTAAGGAGTCTACCCAATTGTGGTCATGGATTTCACGCCGAGTGTGTAGACAAGTGGCTTAGCTGTCACACCACGTGTCCAATTTGTCGGACTGACG CTGAGCCGCCAGTTACAATTAATATTGAGCCGGAACCCCGGGAGGGTCCCGCTGTGGCGGCGGATGCGAAAGTGGTGCCCACTGAAGCGGCAGCGTCGAG CTCCAGAATGGGTTCGTTTAAAAGAATGCTGAGCAGGGAGCGATCGTCCAGGAGAATGCAGATTCAGATTCGAGAAGATGTCGAGAGACAGTGA
AA sequence Show only first row Show all	>Lus10005104 pacid=23171460 polypeptide=Lus10005104 locus=Lus10005104.g ID=Lus10005104.BGIv1.0 annot-version=v1.0 MVRSLPNCGHGFHAECVDKWLSCHTTCPICRTDAEPPVTINIEPEPREGPAVAADAKVVPTEAAASSSRMGSFKRMLSRERSSRRMQIQIREDVERQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42350			RING/U-box superfamily protein...		Lus10005104 [exp]	0	1
AT2G38870			Serine protease inhibitor, pot...		Lus10018783 [exp]	1.0	0.9877
AT5G17740			P-loop containing nucleoside t...		Lus10003213 [exp]	1.4	0.9828
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10016178 [exp]	3.7	0.9752
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10034229 [exp]	4.5	0.9811
AT3G11840		PUB24	plant U-box 24 (.1)		Lus10004191 [exp]	5.7	0.9813
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10002839 [exp]	9.4	0.9712
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10021455 [exp]	12.0	0.9791
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10006119 [exp]	13.9	0.9398
AT4G22030			F-box family protein with a do...		Lus10020029 [exp]	15.2	0.9675
AT2G38870			Serine protease inhibitor, pot...		Lus10018786 [exp]	16.8	0.9766

Compare expression of checked genes

Lus10005104 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.