Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002194 [exp] 151 / 1e-46 AT2G42360 153 / 4e-46 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005105 pacid=23171463 polypeptide=Lus10005105 locus=Lus10005105.g ID=Lus10005105.BGIv1.0 annot-version=v1.0 ATGGCGCAACCAGCTCCGGCACCGGCGTCCGTCCACTTACTCCCTCCCTTCGGCTACATCGACAGCACCGGCGTCCGTGTCTTCGATCCGTACCACATCG AAAGGCAATACAACCTACCTCGCCGCAGCCACTCCCCTTACGACATGAACAGCAAGATCATGCTCGCCGCAATCGTTTCTCTTTCCCTCGTCAGCGCCGT AGTCATCCTCCTCCACCTCTACGCCCGCTACGTCCTCCGCCGCCAGTACCGCCGGACCGTCTTAATCACAACCGACGGCGGGAACCGACGGCGGTGCAAC GACGATCCCACGAAAGACCGGCCTGGACCCCACCGTGATCACTTCCCTGCCGGTCTCTGCTTACAGACAAGGGTTATCAAACGACACCGTGGAGTGTGCG GTGTGTCTTAG
AA sequence Show only first row Show all	>Lus10005105 pacid=23171463 polypeptide=Lus10005105 locus=Lus10005105.g ID=Lus10005105.BGIv1.0 annot-version=v1.0 MAQPAPAPASVHLLPPFGYIDSTGVRVFDPYHIERQYNLPRRSHSPYDMNSKIMLAAIVSLSLVSAVVILLHLYARYVLRRQYRRTVLITTDGGNRRRCN DDPTKDRPGPHRDHFPAGLCLQTRVIKRHRGVCGVS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42360			RING/U-box superfamily protein...		Lus10005105 [exp]	0	1
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10021455 [exp]	2.2	0.9890
					Lus10024872 [exp]	2.8	0.9887
AT5G44440			FAD-binding Berberine family p...		Lus10012641 [exp]	3.3	0.9820
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10034626 [exp]	6.2	0.9864
AT2G38870			Serine protease inhibitor, pot...		Lus10018786 [exp]	7.7	0.9863
AT3G48320		CYP71A21	"cytochrome P450, family 71, s...		Lus10019460 [exp]	10.8	0.9864
AT2G38870			Serine protease inhibitor, pot...		Lus10018783 [exp]	12.0	0.9762
AT4G08250	GRAS		GRAS family transcription fact...		Lus10028056 [exp]	12.2	0.9802
AT4G37470			alpha/beta-Hydrolases superfam...		Lus10000054 [exp]	12.4	0.9445
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10016178 [exp]	12.6	0.9709

Compare expression of checked genes

Lus10005105 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.