Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02380 163 / 4e-47 CO ATCOL2, COL2 CONSTANS-like 2 (.1) AT5G15850 135 / 2e-36 CO COL1, ATCOL1 CONSTANS-like 1 (.1) AT5G15840 132 / 2e-35 CO FG, CO CONSTANS, B-box type zinc finger protein with CCT domain (.1.2) AT2G24790 130 / 5e-35 CO COL3, ATCOL3 CONSTANS-like 3 (.1.2) AT5G57660 123 / 4e-32 CO COL5, ATCOL5 CONSTANS-like 5 (.1) AT5G24930 89 / 2e-19 CO COL4, ATCOL4 CONSTANS-like 4 (.1) AT1G73870 66 / 1e-11 CO COL7 B-box type zinc finger protein with CCT domain (.1) AT1G68520 62 / 2e-10 CO COL6 B-box type zinc finger protein with CCT domain (.1) AT1G49130 60 / 8e-10 CO COL8 B-box type zinc finger protein with CCT domain (.1.2) AT3G21880 59 / 1e-09 CO COL12 B-box type zinc finger protein with CCT domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026238 [exp] 88 / 1e-19 AT5G24930 163 / 9e-48 CONSTANS-like 4 (.1) Lus10042431 [exp] 87 / 1e-19 AT5G24930 180 / 7e-55 CONSTANS-like 4 (.1) Lus10026909 [exp] 87 / 5e-19 AT5G24930 404 / 3e-140 CONSTANS-like 4 (.1) Lus10015619 [exp] 88 / 6e-19 AT5G57660 210 / 3e-64 CONSTANS-like 5 (.1) Lus10020105 [exp] 87 / 6e-19 AT5G24930 398 / 6e-138 CONSTANS-like 4 (.1) Lus10037636 [exp] 84 / 2e-18 AT5G57660 119 / 5e-32 CONSTANS-like 5 (.1) Lus10034349 [exp] 75 / 2e-14 AT1G68390 387 / 3e-131 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10028791 [exp] 60 / 4e-10 AT1G75540 206 / 9e-66 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) Lus10024655 [exp] 60 / 7e-10 AT1G63820 180 / 2e-54 CCT motif family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G107500 [exp] 160 / 1e-45 AT3G02380 330 / 7e-112 CONSTANS-like 2 (.1) Potri.004G108320 [exp] 157 / 1e-44 AT3G02380 302 / 8e-101 CONSTANS-like 2 (.1) Potri.018G096084 [exp] 92 / 2e-20 AT5G57660 283 / 5e-93 CONSTANS-like 5 (.1) Potri.006G173600 [exp] 90 / 9e-20 AT5G57660 315 / 1e-105 CONSTANS-like 5 (.1) Potri.006G267700 [exp] 87 / 7e-19 AT5G24930 361 / 1e-123 CONSTANS-like 4 (.1) Potri.018G013800 [exp] 87 / 8e-19 AT5G24930 348 / 2e-118 CONSTANS-like 4 (.1) Potri.015G054600 [exp] 63 / 9e-11 AT1G25440 272 / 2e-87 B-box type zinc finger protein with CCT domain (.1) Potri.009G124400 [exp] 60 / 2e-10 AT4G38960 251 / 8e-86 B-box type zinc finger family protein (.1.2.3) Potri.010G125100 [exp] 61 / 3e-10 AT1G25440 311 / 3e-102 B-box type zinc finger protein with CCT domain (.1) Potri.008G120400 [exp] 60 / 9e-10 AT1G25440 314 / 2e-103 B-box type zinc finger protein with CCT domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00643 [flax] [poplar] zf-B_box B-box zinc finger CL0281 [flax] [poplar] CCT PF06203 [flax] [poplar] CCT CCT motif
Representative CDS sequence Show only first row Show all	>Lus10005106 pacid=23171467 polypeptide=Lus10005106 locus=Lus10005106.g ID=Lus10005106.BGIv1.0 annot-version=v1.0 ATGATGATGATGATGAAGCAAGAAGAAAGCACCGGCGGCGGAGCATTCGGTGAAGCAAGCGCCATAACCAACTGGGGAGGACACCGCGTATGCCACACGT GCGGCGGTACGTCAAGTTCCGCGGCGTACTCCTGCAGCGCGTGTGACAGGAACGAGCGCGTGGTGCGGATATGCGACGCGTGTGAACTCGCTCCGGCAGT GTTGTACTGCAAGGCGGACGCCGCATCCCTCTGCCCATCCTGCGACGCACACATACACTCCGTCAACCATCTCGCCCGCCGTCACCACCGAGTCTCGATT CTTCATCCCGGAGCTCCAGCGGAGGAGGAAGGCGGTCAGAATGACGACGATGAGGCTGCTTCTTGGTTGTTGCCTAATCCTCATGATGACGGAAAGCTAA TTATTAATATGAATGAAGCTGCATTAGTAGTGGATGATAATAAAGAGGATTTGGATACGGTAGAGTACATGTCAACGACGGAAGAGGGATACGGCTACGG AGGCGGCGGCGAAGAAGGGGTTGTTCCGTTCCAGCTGCCATTCGAGCGTTACCATAACTTTAACGTAACCAGCCTGTTTGACGACGACGACTTCTACGAC GACGACTCGTCGTCTTCGCCTAAACCATCAACATCGACCAATTACAATCATCATGCGGTGAATTACATGGAAGTGGGAGTGGTGCCGGATGATGATGAGT CAACGGAAAAGGGCAGATTTGTTCATCAAGAGATGTTGACTAGTACGACGAACTCATCAACGTCGCCGGCGGCGATAAAATTGAGAGGAAAGGAGAGGGA GGCGAGGGTGGTGAGATACAGAGAGAAGAAGTTGAGGAGGAAGTTCGAGAAGACAATAAGATACGCTTCAAGAAAGGCTTACGCTGAGACAAGGCCTCGT ATCAAGGGACGCTTTGCCAAGAGATCATCAAAACTAGTCAACAATATCAATATTGACCACCACCACAGCTTGTTCTCTGCAGCAGCACCAATAATATCTT CTCATGATGATCAAACTAGTAGTACTGGAGGAGGAGGAGGAGGAGGGTCGTATGGTCAAGTTGTGCCCTCTTTGTATTAA
AA sequence Show only first row Show all	>Lus10005106 pacid=23171467 polypeptide=Lus10005106 locus=Lus10005106.g ID=Lus10005106.BGIv1.0 annot-version=v1.0 MMMMMKQEESTGGGAFGEASAITNWGGHRVCHTCGGTSSSAAYSCSACDRNERVVRICDACELAPAVLYCKADAASLCPSCDAHIHSVNHLARRHHRVSI LHPGAPAEEEGGQNDDDEAASWLLPNPHDDGKLIINMNEAALVVDDNKEDLDTVEYMSTTEEGYGYGGGGEEGVVPFQLPFERYHNFNVTSLFDDDDFYD DDSSSSPKPSTSTNYNHHAVNYMEVGVVPDDDESTEKGRFVHQEMLTSTTNSSTSPAAIKLRGKEREARVVRYREKKLRRKFEKTIRYASRKAYAETRPR IKGRFAKRSSKLVNNINIDHHHSLFSAAAPIISSHDDQTSSTGGGGGGGSYGQVVPSLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02380	CO	ATCOL2, COL2	CONSTANS-like 2 (.1)		Lus10005106 [exp]	0	1
AT1G72030			Acyl-CoA N-acyltransferases (N...		Lus10021995 [exp]	1.7	0.9547
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Lus10030141 [exp]	2.4	0.9459
AT1G72030			Acyl-CoA N-acyltransferases (N...		Lus10042534 [exp]	2.8	0.9361
AT3G15760			unknown protein		Lus10005715 [exp]	3.5	0.9174
					Lus10017606 [exp]	4.6	0.9153
AT5G49740		ATFRO7, FRO7	ferric reduction oxidase 7 (.1...		Lus10012161 [exp]	5.7	0.9136
AT5G55570			unknown protein		Lus10008950 [exp]	6.3	0.9361
AT4G27360			Dynein light chain type 1 fami...		Lus10038566 [exp]	8.5	0.8957
AT4G27030		FADA, FAD4	FATTY ACID DESATURASE 4, fatty...		Lus10037808 [exp]	10.4	0.9074
AT2G21970		SEP2	stress enhanced protein 2 (.1)		Lus10035846 [exp]	11.5	0.9007

Compare expression of checked genes

Lus10005106 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.