Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68380 92 / 4e-21 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G21310 92 / 7e-21 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G10280 87 / 4e-19 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G51770 86 / 6e-19 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT5G25970 85 / 2e-18 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G73810 71 / 1e-13 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G32290 60 / 6e-10 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G11940 56 / 8e-09 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G62305 53 / 8e-08 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT3G52060 51 / 3e-07 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003499 [exp] 96 / 3e-22 AT3G21310 503 / 3e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10009738 [exp] 94 / 1e-21 AT3G21310 511 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10007457 [exp] 94 / 2e-21 AT5G11730 489 / 1e-170 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10035297 [exp] 53 / 1e-07 AT1G11940 371 / 4e-127 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10001503 [exp] 52 / 1e-07 AT4G32290 382 / 7e-132 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10030027 [exp] 51 / 4e-07 AT1G11940 369 / 1e-126 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10002919 [exp] 49 / 1e-06 AT5G25330 389 / 4e-135 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10008954 [exp] 48 / 5e-06 AT3G52060 400 / 2e-139 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10028866 [exp] 47 / 6e-06 AT3G52060 393 / 1e-136 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G123500 [exp] 132 / 1e-36 AT1G68380 254 / 1e-82 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121900 [exp] 104 / 2e-25 AT5G11730 409 / 1e-141 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G195900 [exp] 97 / 7e-23 AT3G21310 504 / 8e-180 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.018G059100 [exp] 94 / 7e-22 AT5G11730 548 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G233400 [exp] 89 / 6e-20 AT5G11730 557 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.003G001700 [exp] 84 / 4e-18 AT1G10280 543 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G228100 [exp] 83 / 7e-18 AT1G10280 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.002G227000 [exp] 56 / 1e-08 AT1G11940 369 / 7e-126 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.009G017300 [exp] 52 / 1e-07 AT5G22070 418 / 7e-146 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G215400 [exp] 52 / 2e-07 AT5G22070 421 / 1e-146 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF02485 [flax] [poplar] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Lus10005107 pacid=23171474 polypeptide=Lus10005107 locus=Lus10005107.g ID=Lus10005107.BGIv1.0 annot-version=v1.0 ATGGGCCGGGTCGGGTTGAGGGAGTACATGAAGATACCGGAAGCGATGCACGACATGGAGGAAGAAGAGTTGCTGTGGAGGGCTTCAATGGTGCCGAAGG TGAAAGAGTATCCGTTTGGTCGGACTCCGAAAGTGGCGTTTTTGTTTCTGACGAAAGGTCCAATACTGTTAACTCCGATGTGGGAGATGTTCTTCAAAGG CGTTGATCAATCGCGTTACTCCATTTACGTGCATTCCTCTCCTGCTTACGTGGCGCCTCCTGACGAGAGCCCGCTCTTCCGCCCCCGTCGGAGGCACAAC AAATCGGATTCCCAGCAAGGACGTGGTATGGGGGAAATTCAACATGATGGAAGCAGAGAGACGCCTACTAGCAAACGCGCTCCTCGACATCTCGAACCAA CGATTCGTGCTACTCTCCGAATCATGCATCCCACTCTTCAACTTCTCAACGGTCTACAACTACCTCGTCAACTCAACCCACGTCCACGTGGAGGCCTACG ATTCGCCAGCTGGCCGCTCCCGCTACACCCAGGACATGCTGCCCGAGATGAAGATCTCCCAGTGGCGAAAGGGGTCCCAGTGGTTCGAGATCGACAGGGA GATCGCTCTCGAGGTGGTCTCCGACAGGAAGTACTTCACCAAGCTGAAACACCACTGCAAGAACACCGCGTGCTACGTGGACGAGCACTACCTCCCCACG TACTTGAGCATAGAGCACTGGAGGAGGAACTCGAACCGGAGCGTGACCTGGGCGGACTGGTCGTACGGTGGGATCCACCCGAACCGGTACGTGAGGAGCG AGGTGACCGAAGGGTTCTTGGAGAAGCTGAGGAGTGGGAGCGGGGAGTGTTTGTATAA
AA sequence Show only first row Show all	>Lus10005107 pacid=23171474 polypeptide=Lus10005107 locus=Lus10005107.g ID=Lus10005107.BGIv1.0 annot-version=v1.0 MGRVGLREYMKIPEAMHDMEEEELLWRASMVPKVKEYPFGRTPKVAFLFLTKGPILLTPMWEMFFKGVDQSRYSIYVHSSPAYVAPPDESPLFRPRRRHN KSDSQQGRGMGEIQHDGSRETPTSKRAPRHLEPTIRATLRIMHPTLQLLNGLQLPRQLNPRPRGGLRFASWPLPLHPGHAARDEDLPVAKGVPVVRDRQG DRSRGGLRQEVLHQAETPLQEHRVLRGRALPPHVLEHRALEEELEPERDLGGLVVRWDPPEPVREERGDRRVLGEAEEWERGVFV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10005107 [exp]	0	1
AT5G39150			RmlC-like cupins superfamily p...		Lus10006536 [exp]	1.4	0.9926
AT2G47710			Adenine nucleotide alpha hydro...		Lus10006701 [exp]	2.8	0.9866
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10012724 [exp]	2.8	0.9921
AT1G14540			Peroxidase superfamily protein...		Lus10009904 [exp]	3.9	0.9888
AT1G13080		CYP71B2	"cytochrome P450, family 71, s...		Lus10043312 [exp]	3.9	0.9910
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10011346 [exp]	5.3	0.9889
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10038200 [exp]	6.0	0.9866
AT5G39120			RmlC-like cupins superfamily p...		Lus10006538 [exp]	6.5	0.9851
AT1G14550			Peroxidase superfamily protein...		Lus10009900 [exp]	7.7	0.9861
AT1G14540			Peroxidase superfamily protein...		Lus10000003 [exp]	9.4	0.9799

Compare expression of checked genes

Lus10005107 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.