Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10880 328 / 3e-108 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G16170 320 / 6e-108 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G11730 314 / 7e-106 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G10280 314 / 2e-105 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G51770 312 / 4e-105 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT3G21310 310 / 2e-104 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G25970 306 / 5e-103 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G68390 286 / 1e-94 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G73810 271 / 7e-89 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G68380 263 / 8e-86 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005504 [exp] 314 / 1e-105 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005505 [exp] 314 / 1e-105 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10007457 [exp] 314 / 1e-103 AT5G11730 489 / 1e-170 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10035828 [exp] 306 / 4e-102 AT1G68390 401 / 7e-138 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10036610 [exp] 305 / 8e-102 AT1G68390 404 / 3e-139 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10002989 [exp] 302 / 6e-101 AT1G10280 525 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10036774 [exp] 301 / 6e-101 AT5G16170 350 / 1e-118 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10024468 [exp] 301 / 1e-100 AT1G10280 524 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10009738 [exp] 295 / 3e-98 AT3G21310 511 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G121900 [exp] 410 / 2e-143 AT5G11730 409 / 1e-141 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045500 [exp] 354 / 2e-121 AT5G16170 394 / 2e-135 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G097700 [exp] 348 / 3e-119 AT5G16170 452 / 6e-159 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G233400 [exp] 325 / 3e-110 AT5G11730 557 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.018G059100 [exp] 312 / 2e-105 AT5G11730 548 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045400 [exp] 311 / 1e-104 AT1G68390 390 / 2e-134 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121800 [exp] 310 / 2e-104 AT1G68390 399 / 1e-137 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G195900 [exp] 307 / 2e-103 AT3G21310 504 / 8e-180 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.003G001700 [exp] 304 / 8e-102 AT1G10280 543 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G228100 [exp] 296 / 8e-99 AT1G10280 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF02485 [flax] [poplar] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Lus10005108 pacid=23171478 polypeptide=Lus10005108 locus=Lus10005108.g ID=Lus10005108.BGIv1.0 annot-version=v1.0 ATGAGCGACGATGAGCTATTTCAGCGAGCATCCATGGATCCACACATCTCCAACAACTATCCTTTTATTCCTACACCAAAACTTGCCTTCATGTTCTTAA TCAAGGATGGAAACTTCCCTTATCTCGCTCCCTTATGGGAGTTGTTCTTCAAAGGTCACAACCAATCTTTTTATTCCATCTATGTCCATGTTTCCCGTCT TCATGATCCTACCAACTTATCCACATCACAACCACCAATATCCTCTGTCTTCTACAACCGGATTATCCCGAGTAAGCCGGTCCGATGGGGGACATCGACC ATGGTCGATGCAGAAAGGAGGCTACTCGCCAACGCCCTCCTCGACTTCTCCAACCAACGGTTTGTCCTCCTCTCCGAGTCTTGCATCCCTTTATTCAATT TCACCACCATCTACAACTACCTAGTTTTCAGTTTCTCCAACACGAGCTTCTTGGGCTCGATTGATGATCCCCGACCCATGGGCCGAGGCAGATACAACAA GCGTATGCAGCCAAACATCACGCTATCAGACTGGCGCAAAGGTAGCCAATGGTTCGTAGTTCATCACAAGGTAGCCATTCTGATGGTCTCTGATGTTAAA TACTACCATATTTTCGAACAACATTGTAAGCCTCCGTGTTACATGGATGAACACTATTTCCCGACCCTTGTGACCAAACTTTTGCTCGAGATGAACTCGA ACCATAGCATCACTTGGGTTGATTGGTCCAAAGGTGGGTCACATCCTACCATGTTTTTGAGGAAGGATGTGAGCCTAGGGTTCTTGATGAGGATCAGAAA CATGTCCGATTGTGCTTATAGTGATCAAAACCATGGAACAATTTGTTTCCTCTTTGCTAGAAAGTTTCACCCTGGTACTTTAGAGCCTTTGTTGAGGGTA GCTCCATCTTTGTTTGGTTTAAACACTTAG
AA sequence Show only first row Show all	>Lus10005108 pacid=23171478 polypeptide=Lus10005108 locus=Lus10005108.g ID=Lus10005108.BGIv1.0 annot-version=v1.0 MSDDELFQRASMDPHISNNYPFIPTPKLAFMFLIKDGNFPYLAPLWELFFKGHNQSFYSIYVHVSRLHDPTNLSTSQPPISSVFYNRIIPSKPVRWGTST MVDAERRLLANALLDFSNQRFVLLSESCIPLFNFTTIYNYLVFSFSNTSFLGSIDDPRPMGRGRYNKRMQPNITLSDWRKGSQWFVVHHKVAILMVSDVK YYHIFEQHCKPPCYMDEHYFPTLVTKLLLEMNSNHSITWVDWSKGGSHPTMFLRKDVSLGFLMRIRNMSDCAYSDQNHGTICFLFARKFHPGTLEPLLRV APSLFGLNT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10880			Core-2/I-branching beta-1,6-N-...		Lus10005108 [exp]	0	1
AT2G43040		NPG1	no pollen germination 1, tetra...		Lus10033595 [exp]	8.1	0.7303
					Lus10011249 [exp]	8.9	0.7863
					Lus10013172 [exp]	14.7	0.7009
					Lus10043138 [exp]	16.3	0.7321
					Lus10011453 [exp]	17.7	0.7439
AT1G17400			unknown protein		Lus10039921 [exp]	23.4	0.7439
AT4G29250			HXXXD-type acyl-transferase fa...		Lus10041782 [exp]	27.7	0.7339
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10038514 [exp]	31.1	0.7008
					Lus10034724 [exp]	35.4	0.6911
AT1G61720		BAN	BANYULS, NAD(P)-binding Rossma...		Lus10006750 [exp]	37.6	0.7038

Compare expression of checked genes

Lus10005108 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.