Plant FIBer expression Database

Lus10005109 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G25375 530 / 0 Metallo-hydrolase/oxidoreductase superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G122100
[exp]
646 / 0 AT1G25375 600 / 0.0 Metallo-hydrolase/oxidoreductase superfamily protein (.1)
Potri.010G122000
[exp]
606 / 0 AT1G25375 572 / 0.0 Metallo-hydrolase/oxidoreductase superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10005109 pacid=23171475 polypeptide=Lus10005109 locus=Lus10005109.g ID=Lus10005109.BGIv1.0 annot-version=v1.0
ATGTCCACTCACATTCTCGCTTTGATCCTCAGAAATGCTTCCAACAATGACGAGTTCATTCTTCTCAGACAAACCCCACCTCCCAAATTTAACGACGAAG
AGTACGATTCCTTTCTGGATTCTCATCTCTCGGACCTGCCATCTACCAAACTCAACCCCGTGGAAGCAGTCTCGGAGCCTGGGCCACTGATCGATGGCGC
GGACTCCTTCACTGATACCATCGATTTGAGGAATTTCGACCTCGCCGCCGCTATTACTAGATTGCTGGGGAATGTGGGTTTCAAGGAAACTGATGTTGGA
GAGTGGAGAGTTTCGAGATTCGTCGAGGAACCAGAGTTTGGACCTGGTTTGCCCGTTCGAACTGTCTACTTGGATGCCAAGTTAGCTCCGGGTGACCAAC
AATTACCAGATCTATGCAAGTGGATGTCTGTAGAAAGCTGTCTGGCTCTACTACATGATGTAACACCGGGAAATGATCGCGTGGGGACCTTGGCTGCAGT
TGCTCTTACTCATGAATCCATGGGGTTATCGGGACAGAAAGTCCATACAAACTTGCGGTACCAGGAGTACCCTCCGGGGGTAATTCTTATTCCCATGACA
AGTAGGACAGCTAAACCTTTCCGTACGACAAACTTAATTATATTTGCACCACAGAACATTTCAGATGAATTCAACGACAACAGTAATGCGATATCAGGAG
ACGTTCTGATAGTAGATCCAGGGTGCCAAACCCATGTTCACGAGGAGCTTCTGAAAATTGTTGGTGCTCTTTCTGGAAAATTCGTCGTCTTTGTGACACA
TCACCATCCTGATCATGTGGATGGTCTTTCTGTAATCGAAAAATGTAAGCCTGATGCCAACTTAGTAGCGCATGAGAACACAATGCGAAGAATTAAGAAA
GATGACTGGTCCCGTGACTCTACTTTAGTTTCTGGAGGAGAAGACATTCTCATTGGCAATCAGAGACTGAAAGTCATTTCTGCTCCAATTGTATTGTGCA
TACTTGATATACATAGGATGCTTAGGTCTTATGTCACTGTACCTGTGCAGGGACACACTGATGGTCATTTGGCGTTGCTTCATGTCAATTCTCACTCGCT
GATTGTGGGTGATCATTGTGTGGGTCAAGGAAGCGTTGTTTTAGACATCACCGCTGGTGGAAATATGTCAGATTATTTCCAATCAACTTACAGATTTATT
GACCTATCTCCCCACACTTTGATTCCGATGCACGGGAGAGTGAATCTGTGGCCAAAGAACATGCTCTGTGGTTACCTCAAGAACCGTCGAAGTAGAGAAG
CTTCGATCTTGAAAGCTATAGAGATGGGAAATAAGACACTGATCGATATAGTAGCAAATGTTTATTCCGAAGTGGATCATCGTTTCTGGATTCCCGCTGC
CTCAAATGTGAGGCTTCATGTGTCGCATTTGGCAGAGCAAGGCAAGTTACCCGAGGGTTTCTCTATGGAAAGGTTCGAAAGAACATGCGGGGCACATTTC
TTCTGCAGATGGGGATGGATGTTCCTTGCTAGTAAAAAGTGCTCAACCCCTAAATTACTTGTTGGTGGAGCAGTAGCTGGCTTAGCCCTGGCGTGGTCCT
TCAGGAACAAGCTTATATCCAAGTAG
AA sequence
>Lus10005109 pacid=23171475 polypeptide=Lus10005109 locus=Lus10005109.g ID=Lus10005109.BGIv1.0 annot-version=v1.0
MSTHILALILRNASNNDEFILLRQTPPPKFNDEEYDSFLDSHLSDLPSTKLNPVEAVSEPGPLIDGADSFTDTIDLRNFDLAAAITRLLGNVGFKETDVG
EWRVSRFVEEPEFGPGLPVRTVYLDAKLAPGDQQLPDLCKWMSVESCLALLHDVTPGNDRVGTLAAVALTHESMGLSGQKVHTNLRYQEYPPGVILIPMT
SRTAKPFRTTNLIIFAPQNISDEFNDNSNAISGDVLIVDPGCQTHVHEELLKIVGALSGKFVVFVTHHHPDHVDGLSVIEKCKPDANLVAHENTMRRIKK
DDWSRDSTLVSGGEDILIGNQRLKVISAPIVLCILDIHRMLRSYVTVPVQGHTDGHLALLHVNSHSLIVGDHCVGQGSVVLDITAGGNMSDYFQSTYRFI
DLSPHTLIPMHGRVNLWPKNMLCGYLKNRRSREASILKAIEMGNKTLIDIVANVYSEVDHRFWIPAASNVRLHVSHLAEQGKLPEGFSMERFERTCGAHF
FCRWGWMFLASKKCSTPKLLVGGAVAGLALAWSFRNKLISK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G25375 Metallo-hydrolase/oxidoreducta... Lus10005109
[exp]
0 1
AT1G13570 F-box/RNI-like superfamily pro... Lus10034415
[exp]
1.4 0.8533
AT3G08510 ATPLC2 phospholipase C 2 (.1.2.3) Lus10014845
[exp]
1.7 0.8031
AT4G27080 ATPDI7, ATPDIL5... ARABIDOPSIS THALIANA PROTEIN D... Lus10019611
[exp]
3.5 0.7541
AT5G22460 alpha/beta-Hydrolases superfam... Lus10020603
[exp]
3.7 0.7796
AT1G74910 ADP-glucose pyrophosphorylase ... Lus10042942
[exp]
3.9 0.7990
AT4G35920 MCA1 mid1-complementing activity 1,... Lus10014256
[exp]
5.2 0.7614
AT3G08720 ATPK2, ATPK19, ... ARABIDOPSIS THALIANA SERINE/TH... Lus10025213
[exp]
5.3 0.8010
AT3G44820 Phototropic-responsive NPH3 fa... Lus10019522
[exp]
5.5 0.8164
AT1G05170 Galactosyltransferase family p... Lus10020042
[exp]
11.7 0.7714
AT5G11960 Protein of unknown function (D... Lus10004444
[exp]
13.3 0.7559

Lus10005109 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.