Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18290 1561 / 0 BTS, EMB2454 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) AT1G18910 472 / 2e-145 zinc ion binding;zinc ion binding (.1) AT1G74770 463 / 4e-142 zinc ion binding (.1) AT3G62970 201 / 1e-57 zinc finger (C3HC4-type RING finger) family protein (.1) AT5G18650 180 / 9e-51 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) AT5G22920 180 / 3e-50 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) AT5G25560 180 / 4e-50 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1.2.3.4) AT3G10815 47 / 2e-05 RING/U-box superfamily protein (.1) AT2G40830 48 / 3e-05 RHC1A RING-H2 finger C1A (.1.2.3) AT3G56580 45 / 0.0003 RING/U-box superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034346 [exp] 2316 / 0 AT3G18290 1467 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Lus10042190 [exp] 494 / 3e-161 AT1G18910 563 / 0.0 zinc ion binding;zinc ion binding (.1) Lus10008628 [exp] 403 / 9e-120 AT1G74770 1024 / 0.0 zinc ion binding (.1) Lus10042188 [exp] 215 / 4e-64 AT1G74770 253 / 2e-78 zinc ion binding (.1) Lus10008627 [exp] 198 / 2e-53 AT2G02800 475 / 6e-164 protein kinase 2B (.1.2) Lus10012811 [exp] 189 / 2e-53 AT5G18650 465 / 1e-167 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Lus10042189 [exp] 190 / 8e-49 AT1G18910 583 / 0.0 zinc ion binding;zinc ion binding (.1) Lus10033969 [exp] 172 / 7e-48 AT5G18650 449 / 2e-161 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Lus10023914 [exp] 111 / 4e-26 AT5G22920 225 / 8e-72 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G122200 [exp] 1942 / 0 AT3G18290 1578 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Potri.008G123300 [exp] 1938 / 0 AT3G18290 1604 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Potri.012G055100 [exp] 1627 / 0 AT3G18290 1641 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Potri.015G066600 [exp] 685 / 0 AT1G74770 1199 / 0.0 zinc ion binding (.1) Potri.014G134400 [exp] 189 / 1e-53 AT3G62970 393 / 3e-139 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.009G005700 [exp] 182 / 5e-51 AT5G22920 437 / 8e-156 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Potri.008G205400 [exp] 181 / 9e-51 AT5G18650 466 / 2e-168 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Potri.006G245400 [exp] 177 / 2e-49 AT5G25560 475 / 7e-171 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1.2.3.4) Potri.006G121801 [exp] 160 / 8e-44 AT5G22920 398 / 6e-141 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Potri.006G032100 [exp] 46 / 0.0001 AT2G40830 327 / 1e-111 RING-H2 finger C1A (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01814 [flax] [poplar] Hemerythrin Hemerythrin HHE cation binding domain PF05495 [flax] [poplar] zf-CHY CHY zinc finger
Representative CDS sequence Show only first row Show all	>Lus10005111 pacid=23171483 polypeptide=Lus10005111 locus=Lus10005111.g ID=Lus10005111.BGIv1.0 annot-version=v1.0 ATGGCGACGCCGTTTTCCGCTGTCGACGGAGGCGCCGGTGGAGTGGCGGTAATGGCAGGTCCACTCAACGCAATCGATCCTTCCACGCCTTCCAAGTCTT GTGTCAAGAATTCCGTACTCAAGTCACCAATACTCATATTTCTCTTCTTCCATAAAGCTATCCGGTCCGAGCTGGACGGCCTCCACCGCGCCGCCGTCGA TTTCGCCACCGCTGGCGGAGATATTAAACCTTTGCTCCTCAAGTATCACTTCCTTCGTCGGATATATAAGCACCACTGCAATGCTGAGGATGAGGTCATC TTTCCAGCTCTTGACATACGCGTGAAGAATGTAGCTCGAACTTACTCCCTTGAACATGAGGGAGAAAGTGTTCTTTTTGATGAGTTATTTGAGCTATTGA ATTCAAGTATACAAAATGAAGAAAGCTATCGGAGAGAGTTAGCTTCTCGTACTGGAGCCATAAAAACATCAATTAGCCAACATATGTCAAAGGAAGAAGA GCAGGTCTTCCCACTGCTCATTGAGAAGTTTTCATTTGAAGAGCAGGCTTCACTGGTTTGGCAGTTTCTATGCAGCATTCCTATAAATATGATGGCCGAG TTTCTGCCATGGCTTTCTTCCTCAGTTTCATCCGACGAACACCAAGATATGCGTAAGTGCTTGTCCAAGATAATACCCAACAAGAAGCTTCTTCAGCAGG TGATATTTACCTGGATGGAGGGGACAGAACCCTCTGATGCCTGTAAGACTTGTGAAGGTGGTTCACATTCAACGACAGTTTCAGAAAGAGAATCATTCTG TAAAAGAGAAATGCATTGTGCATGTGAATCATCTGGAAATGGTAAAAGGAAATATATGGAGCTAAGCTCCGATCTTGTTAATTCAACCATGCTTCATCCT GTTGACGAAATCTTGCTGTGGCATAATGCAATCAAGAGAGAGTTGACTGACATAAGTGAGGCAGCTAAGAAGGTACAACTGTCTGGAGACTTTTCCGATC TCTCAGCCTTCAACAAGAGACTGCAATTCATTGCAGAAGTTTGCATCTTTCACAGTATTGCTGAGGATGAGGTTATATTCCCTGCAGTAGATTCCGAACT ATCTTTTGTTCAGGAGCATGCCGAAGAAGAGATTCAGTTTGACAAACTTAGATGCCTCATTGAAAGCATTCAAAATGCTCGGGCCAACATATCACTCACT GAGTTTTATGGAAAGCTCTGCGCACAAGCTGATCAAATCATGGACAGCATACAAAAGCATTTTAAAAACGAGGAGATTCAGGTTCTACCACTTGCCCGAA AGCATTTTAGTGCAAAAAGACAGCGTGAGCTTCTATACCAGAGCTTATGCGTGATGCCTCTGAAATTAGTTGAATGTGTTCTACCATGGTTGGTAGCATC AATCACTGAACAGGAAGCAAGATTATTTCTCCAAAATATTTATCTAGCAGCACCAGCATCGGATTCTGCATTGGTTACCCTGTTTGCTGGTTGGGCATGC AAAGGTCGTTCTGGAAGTGCTTGCTTGTCCTCAAGTCCCCTTAATGGCTGTCCTGCGAAAAGCACAACGAATGATCTTAAACAGTTTGGCTGCCCTTGCA TCCCTGTTTCATGTCCTAATGGGAAGTCATTTATTGATGGCCAAAAAGAGATATCAAACTGTGGAAGGCCAGTCAAGAGGCCAAACTCTGTTGCACACGA AGAGAATGGTTCTTGTCATTCTTCTGGGTCTGGCCGCCTTCACCAATCATCTGCTAACAATGCTTCGTGCTGTGTACCAGCACTGGGAGTAAATAGCAGT AGTCTAGGAATTGGTTCTCTTGCAGCAGCAAAATCTCTACGATCTTTAGCTGTTAGTCCTTCTGCTCCATCTCTTAATTCTAGTCTCTTTAACTGGGAAA TAGATGTGAGTCCCTCTGATACTGGCTGTGGATCACGCCCTATAGATAACATATTCCAATTTCACAAAGCCATCCGTAAGGACTTGGAGTATTTGGACGT TGAATCCGGAAAGCTATGTGAACGCAGTGAAACTTTGCTTAGGCAGTTCACTGGAAGGTTTCGCTTGCTATGGGGGTTATATAGAGCACATAGCAATGCC GAGGATGATATAGTGTTTCCGGCATTGGAAGCTAAAGAGACACTTCATAATGTTAGCCATTCCTATACACTGGATCATAAGCAGGAGGAGAAACTCTTTG AAGACATCTCAACTACGTTATCTGATCTTACACAACTCCATGAATCCTGGAAGAGGAGCAGACTTTGTGTTGATTTATCAGGAGATCTCAGTGGTGCTAA TGACTCTGATGAGGTTGTTAGAAGGTACAATGAGCTTGCAACAAAGCTTCAGGGCATGTGCAAATCCATAAGAGTAACACTGGATCAACATGTTTTCCGG GAAGAACTAGAATTGTGGCCATTGTTTGACAGACACTTCTCAGTCGAGGAACAGGACAAAATTGTAGGACGAATTATTGGTACTACAGGGGCAGAGGTGC TCCAGTCGATGTTGCCATGGGTAACATCTGCTCTTACTCAGGAAGAGCAGAATAAGATGATGGATACCTGGAAGCAGGCAACCAAAAATACTATGTTCAG TGAGTGGCTAAATGAATGGTGGGAAGGAAACTCTAAGGATACTCATATAGGAACAGCAGAAAGCTGCCTATCCCAGGGTGCTGATATTCATGAAAGTCTG GATTACAGTGATCAAAAGTTTAAGCCTGGGTGGAAAGATATTTTTCGGATGAATCAGAATGAGCTTGAAGCAGAAATACGGAAGGTTTCTCGAGATTCCA CTCTTGATCCTAGAAGAAAAGCCTACCTGATTCAAAATCTTATGACCAGTCGGTGGATAGCAGCTCAGCAAAAGTCAATTCAATCTAGGACTGGTGAATC TTCGAATAGTGAAAAATTGGAGTGCTCTCCTTCATTTCGCGACCAGGACAAGAAAGTTTTTGGATGCGAGCATTACAAGCGGAATTGTAAGCTTCGGGCA GCATGCTGTGGCAAGTTGTTTACATGCCGATTTTGTCATGATAAAGTCAGTGACCATTCAATGGACAGGAAGGCTACGACTGAGATGATGTGTATGCAAT GCCTGAAAATTCAACCTGCTGGACCTGTTTGTGCAACACCTTCCTGTGGTGGGTTGTCAATGGCAAAGTATTATTGCAACATTTGTAAATTCTTCGATGA TGAAAGAAACGTTTATCACTGTCCCTTCTGCAATCTATGCCGTGTTGGGAAGGGACTGGGTATTGATTTCTTCCATTGTATGAAGTGCAATTACTGCCTT ACAATAAAGTTGGTTGACCATAAATGCCGAGAGAAGGGCTTGGAAACAAATTGCCCCATTTGTTGTGATGATTTGTTCACATCAAGTGCAACTGTCAGAG GCCTTCCATGTGGTCATTTCATGCATTCGAGCTGCTTTCAGGCGTATACAGTCAGTCACTATGTATGCCCAATTTGCAGCAAGTCGATGGGAGATATGTC GGTCTACTTCGGAATGCTTGATGCACTGCTGGCTTCTGAGCAACTACCGGAAGAATACAGGGATCACTGTCAGGATATACTGTGCAATGATTGCGACAAG AAGGGAAGTGCGCCGTTCCATTGGCTGTACCACAAGTGCAGGTCCTGCGGTTCCTACAACACCAGGGTCATCAAGACTGATTCCAGCTGCCCTACTCCAA ACCAACCCCAAACTGAGTGA
AA sequence Show only first row Show all	>Lus10005111 pacid=23171483 polypeptide=Lus10005111 locus=Lus10005111.g ID=Lus10005111.BGIv1.0 annot-version=v1.0 MATPFSAVDGGAGGVAVMAGPLNAIDPSTPSKSCVKNSVLKSPILIFLFFHKAIRSELDGLHRAAVDFATAGGDIKPLLLKYHFLRRIYKHHCNAEDEVI FPALDIRVKNVARTYSLEHEGESVLFDELFELLNSSIQNEESYRRELASRTGAIKTSISQHMSKEEEQVFPLLIEKFSFEEQASLVWQFLCSIPINMMAE FLPWLSSSVSSDEHQDMRKCLSKIIPNKKLLQQVIFTWMEGTEPSDACKTCEGGSHSTTVSERESFCKREMHCACESSGNGKRKYMELSSDLVNSTMLHP VDEILLWHNAIKRELTDISEAAKKVQLSGDFSDLSAFNKRLQFIAEVCIFHSIAEDEVIFPAVDSELSFVQEHAEEEIQFDKLRCLIESIQNARANISLT EFYGKLCAQADQIMDSIQKHFKNEEIQVLPLARKHFSAKRQRELLYQSLCVMPLKLVECVLPWLVASITEQEARLFLQNIYLAAPASDSALVTLFAGWAC KGRSGSACLSSSPLNGCPAKSTTNDLKQFGCPCIPVSCPNGKSFIDGQKEISNCGRPVKRPNSVAHEENGSCHSSGSGRLHQSSANNASCCVPALGVNSS SLGIGSLAAAKSLRSLAVSPSAPSLNSSLFNWEIDVSPSDTGCGSRPIDNIFQFHKAIRKDLEYLDVESGKLCERSETLLRQFTGRFRLLWGLYRAHSNA EDDIVFPALEAKETLHNVSHSYTLDHKQEEKLFEDISTTLSDLTQLHESWKRSRLCVDLSGDLSGANDSDEVVRRYNELATKLQGMCKSIRVTLDQHVFR EELELWPLFDRHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNKMMDTWKQATKNTMFSEWLNEWWEGNSKDTHIGTAESCLSQGADIHESL DYSDQKFKPGWKDIFRMNQNELEAEIRKVSRDSTLDPRRKAYLIQNLMTSRWIAAQQKSIQSRTGESSNSEKLECSPSFRDQDKKVFGCEHYKRNCKLRA ACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMQCLKIQPAGPVCATPSCGGLSMAKYYCNICKFFDDERNVYHCPFCNLCRVGKGLGIDFFHCMKCNYCL TIKLVDHKCREKGLETNCPICCDDLFTSSATVRGLPCGHFMHSSCFQAYTVSHYVCPICSKSMGDMSVYFGMLDALLASEQLPEEYRDHCQDILCNDCDK KGSAPFHWLYHKCRSCGSYNTRVIKTDSSCPTPNQPQTE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18290		BTS, EMB2454	embryo defective 2454, BRUTUS,...		Lus10005111 [exp]	0	1
AT4G24200			Transcription elongation facto...		Lus10009128 [exp]	1.4	0.8690
AT5G60170			RNA binding (RRM/RBD/RNP motif...		Lus10036140 [exp]	5.0	0.7990
AT3G16560			Protein phosphatase 2C family ...		Lus10008378 [exp]	5.5	0.7665
AT5G50210		SUFE3, OLD5, QS	SULFUR E 3, ONSET OF LEAF DEAT...		Lus10019464 [exp]	6.0	0.7639
AT2G39940		COI1	CORONATINE INSENSITIVE 1, RNI-...		Lus10014836 [exp]	7.0	0.7691
AT1G14780			MAC/Perforin domain-containing...		Lus10034586 [exp]	8.1	0.7624
AT1G72390			unknown protein		Lus10013169 [exp]	8.2	0.8291
AT1G61140		EDA16	embryo sac development arrest ...		Lus10011211 [exp]	8.7	0.8014
AT2G44520		COX10	cytochrome c oxidase 10 (.1)		Lus10019514 [exp]	9.6	0.7265
AT1G29370			Kinase-related protein of unkn...		Lus10020762 [exp]	12.5	0.7854

Compare expression of checked genes

Lus10005111 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.