Plant FIBer expression Database

Lus10005112 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G73885 113 / 1e-31 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034345
[exp]
264 / 7e-91 AT1G73885 115 / 3e-32 unknown protein
Lus10036498
[exp]
0 / 1 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G054100
[exp]
142 / 3e-43 AT1G73885 135 / 6e-41 unknown protein
Potri.015G053800
[exp]
143 / 4e-43 AT1G73885 137 / 9e-41 unknown protein
PFAM info
Representative CDS sequence
>Lus10005112 pacid=23171487 polypeptide=Lus10005112 locus=Lus10005112.g ID=Lus10005112.BGIv1.0 annot-version=v1.0
ATGGCGCTCTTCGTCGCCAACGGCAACGGCGGTGCCGGAGCTTCAACTCTCTCCTCCGCTACTAAGTCAGCTGCTTCCATACACCGCCATCAGTACGCCT
CCTCCATCCCCCGTCTACCTTTGCCGCTCTCTCCCAAAAGAGCTCACCTCCAGATACGCTCCGCAAGGAACAACAGGCGGAGCTCAACTAAAACGACTGA
GAAACGGGGCAAGATTGACGAGGCTGAGCTTGAAAATAGTATGGGGAGCAGCGCGGGTTTGAATGGTAGTAGTAGCGTTGGTGTCGTTGATGATGGATTT
GTGATGCCGAAGCTTCCAGGACAGGAGAAAGATTTCTGGGAAGGTCCGCAGTGGAATACTCTGGGCTTCGTTGTCGAGTACCTCTGGGGTTTCGGTATTA
TTTTCGCGTTGGTAGCCTGTGGAGTTGCAGTGTCGTCATACAATGAAGGGGCAACAGATTTCAAGGATACTGAGGCATACAAGGAGTCTACTCAGACAGG
GGGGCAGGTTTTAGAAGAAGCTGATGAATCCAACTCAGATGTTTTCGAGTCCAATCCAACAGAAGTGGCACCCAGTTTGGAGTAG
AA sequence
>Lus10005112 pacid=23171487 polypeptide=Lus10005112 locus=Lus10005112.g ID=Lus10005112.BGIv1.0 annot-version=v1.0
MALFVANGNGGAGASTLSSATKSAASIHRHQYASSIPRLPLPLSPKRAHLQIRSARNNRRSSTKTTEKRGKIDEAELENSMGSSAGLNGSSSVGVVDDGF
VMPKLPGQEKDFWEGPQWNTLGFVVEYLWGFGIIFALVACGVAVSSYNEGATDFKDTEAYKESTQTGGQVLEEADESNSDVFESNPTEVAPSLE

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G73885 unknown protein Lus10005112
[exp]
0 1
AT1G73885 unknown protein Lus10034345
[exp]
1.0 0.9734
AT3G23700 Nucleic acid-binding proteins ... Lus10022587
[exp]
2.4 0.9671
AT5G08410 FTRA2 ferredoxin/thioredoxin reducta... Lus10013448
[exp]
2.8 0.9686
AT1G54520 unknown protein Lus10015939
[exp]
3.2 0.9516
AT3G27925 DEGP, DegP1, DE... DegP protease 1 (.1) Lus10008781
[exp]
3.7 0.9544
AT1G18060 unknown protein Lus10017999
[exp]
4.9 0.9625
AT3G09050 unknown protein Lus10035515
[exp]
7.1 0.9446
AT4G03280 PGR1, PETC PROTON GRADIENT REGULATION 1, ... Lus10018521
[exp]
8.1 0.9613
AT4G37930 SHMT1, STM, SHM... SERINE HYDROXYMETHYLTRANSFERAS... Lus10039629
[exp]
8.5 0.9580
AT1G32060 PRK phosphoribulokinase (.1) Lus10000674
[exp]
8.5 0.9534

Lus10005112 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.