Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68370 653 / 0 ARG1 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) AT1G24120 489 / 2e-172 ARL1 ARG1-like 1 (.1) AT1G59980 411 / 4e-142 GPS4, ARL2 ,ATDJC39 gravity persistence signal 4, ARG1-like 2 (.1) AT3G62600 78 / 1e-15 ATERDJ3B DNAJ heat shock family protein (.1) AT5G01390 76 / 1e-15 DNAJ heat shock family protein (.1.2.3.4) AT3G08910 77 / 2e-15 DNAJ heat shock family protein (.1) AT4G28480 77 / 2e-15 DNAJ heat shock family protein (.1.2) AT2G20560 77 / 2e-15 DNAJ heat shock family protein (.1) AT3G17830 77 / 5e-15 Molecular chaperone Hsp40/DnaJ family protein (.1) AT5G16650 71 / 1e-14 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034344 [exp] 677 / 0 AT1G68370 624 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Lus10029202 [exp] 469 / 6e-165 AT1G24120 616 / 0.0 ARG1-like 1 (.1) Lus10010717 [exp] 445 / 1e-154 AT1G24120 590 / 0.0 ARG1-like 1 (.1) Lus10030660 [exp] 441 / 2e-153 AT1G24120 588 / 0.0 ARG1-like 1 (.1) Lus10030827 [exp] 425 / 7e-148 AT1G24120 545 / 0.0 ARG1-like 1 (.1) Lus10014584 [exp] 82 / 4e-17 AT3G62600 521 / 0.0 DNAJ heat shock family protein (.1) Lus10032100 [exp] 82 / 5e-17 AT3G62600 526 / 0.0 DNAJ heat shock family protein (.1) Lus10022297 [exp] 82 / 5e-17 AT3G62600 522 / 0.0 DNAJ heat shock family protein (.1) Lus10011934 [exp] 78 / 2e-15 AT5G48030 499 / 8e-176 gametophytic factor 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G122300 [exp] 684 / 0 AT1G68370 671 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Potri.008G123200 [exp] 669 / 0 AT1G68370 670 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Potri.010G036200 [exp] 469 / 4e-165 AT1G24120 566 / 0.0 ARG1-like 1 (.1) Potri.008G193500 [exp] 468 / 1e-164 AT1G24120 568 / 0.0 ARG1-like 1 (.1) Potri.002G198000 [exp] 82 / 6e-17 AT3G62600 551 / 0.0 DNAJ heat shock family protein (.1) Potri.014G122600 [exp] 80 / 2e-16 AT3G62600 565 / 0.0 DNAJ heat shock family protein (.1) Potri.018G034600 [exp] 78 / 8e-16 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.005G073900 [exp] 77 / 3e-15 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.006G246700 [exp] 76 / 3e-15 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1) Potri.017G016100 [exp] 76 / 8e-15 AT2G20560 420 / 7e-148 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10005113 pacid=23171489 polypeptide=Lus10005113 locus=Lus10005113.g ID=Lus10005113.BGIv1.0 annot-version=v1.0 ATGAGTTCGAAGAAGGAGGAAAGCACTTCAGCTCCAGCAATTCGACGTGACCCATATGAGGTGTTATCTGTTACAAGAGATTCTACCGATCAAGAGATAA AGACCTCGTATAGAAAGCTTGCTCTGAAGTATCATCCGGACAAGAATGCCAATAACCCGGAAGCTTCAGAACTGTTCAAAGAGGTTGCATATTCCTATAG TATCTTATCTGACCCAGAGAAGAGAAGACAGTATGACAGTGCAGGATTTGAGGCGCTGGATGCTGAAAGTATGGACATGGAAATTGATTTGTCAAACCTC GGAACAGTAAATACAGTGTTTGCTGCATTATTCAGCAAGCTTGGTGTTCCTATTAAGACGACGATATCTGCTAATGTACTTGAAGAAGCTTTGAATGGAA CTGTTACCATCAGACCCCTTCCAATGGGGACATCAGTCAGTGGGAAGGTGGACAAGCAATCTGCACACTTCTTTGGTGTGACAATAAACGAACAACAAGC TGAGGCTGGGATTGTTGTGAGGGTTACCTCTACTGCACAGAGCAAATTCAAGTTGCTTTATTTTGAACAAGACGTGAATGGTGGATACGGTCTGGCGGGA CAGGAAGATAGTGAGAAGGCGGGGAAGGTGACATCTGCTGGAATGTATTTCTTGCATTTTCAAGTTTACAGAATGGATTCAACTCTCAACGCTTTAGCTA TCGCTAAGGATCCTGATGCTGCTTTTTTCAAGAGATTGGAAGGTCTTCAACCTTGTGATGTTTCGGAACTGAAAGCGGGCACTCACATATTTGCTGTTTA TGGTGATAATTTTTTCAAGACCGCTACATATACAATTGAAGCCCTCTGTGCAAAGTCATACGAGGAAACAACACAAAGGCTAAAGGATATAGAGGCCCAA ATTTTAAGAAAAAGAAATGACCTACGTCAGTTTGAGACTGAATATAGGAAGGCTTTGGCACGCTTTCAGGAAGTAACCAACAAATACACCCAAGAAAAGC AAGCTGTTGATGAGCTGCTGAAACAGCGGGATAGTATTCACTCGTCATTTACAGTAAACAGGAGTGTTAGTAACATAAGTAATGGAAGTTCAAGCAAAGT TGTTGGGGATGAATCAAGATGTGAAAGTCCAGGAATGGAAGAAGTTGGGTCTGACGGGAAAGATAAAGCATCTAAAAAGAAATGGTTCAACTTGAATCTC AAAAGTGACAAGAAGCCATGA
AA sequence Show only first row Show all	>Lus10005113 pacid=23171489 polypeptide=Lus10005113 locus=Lus10005113.g ID=Lus10005113.BGIv1.0 annot-version=v1.0 MSSKKEESTSAPAIRRDPYEVLSVTRDSTDQEIKTSYRKLALKYHPDKNANNPEASELFKEVAYSYSILSDPEKRRQYDSAGFEALDAESMDMEIDLSNL GTVNTVFAALFSKLGVPIKTTISANVLEEALNGTVTIRPLPMGTSVSGKVDKQSAHFFGVTINEQQAEAGIVVRVTSTAQSKFKLLYFEQDVNGGYGLAG QEDSEKAGKVTSAGMYFLHFQVYRMDSTLNALAIAKDPDAAFFKRLEGLQPCDVSELKAGTHIFAVYGDNFFKTATYTIEALCAKSYEETTQRLKDIEAQ ILRKRNDLRQFETEYRKALARFQEVTNKYTQEKQAVDELLKQRDSIHSSFTVNRSVSNISNGSSSKVVGDESRCESPGMEEVGSDGKDKASKKKWFNLNL KSDKKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68370		ARG1	ALTERED RESPONSE TO GRAVITY 1,...		Lus10005113 [exp]	0	1
AT5G65430		14-3-3KAPPA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10025727 [exp]	1.4	0.8598
AT3G49870		ATARLA1C	ADP-ribosylation factor-like A...		Lus10019259 [exp]	4.7	0.8729
AT1G79910			Regulator of Vps4 activity in ...		Lus10011455 [exp]	7.3	0.8473
AT3G55830		EPC1	ECTOPICALLY PARTING CELLS, Nuc...		Lus10028274 [exp]	7.7	0.8411
AT4G35410			Clathrin adaptor complex small...		Lus10003641 [exp]	8.4	0.8375
AT1G51260		LPAT3	lysophosphatidyl acyltransfera...		Lus10027375 [exp]	11.6	0.8376
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10034045 [exp]	12.3	0.8470
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Lus10027120 [exp]	17.1	0.8254
AT1G75540	CO	LHUS, AtBBX21, ...	long hypocotyl under shade, B-...		Lus10033184 [exp]	17.5	0.8350
AT2G41150			unknown protein		Lus10022403 [exp]	22.6	0.8242

Compare expression of checked genes

Lus10005113 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.