Plant FIBer expression Database

Lus10005114 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G30775 461 / 6e-159 PDH1, PRODH, PRO1, AT-POX, ATPOX, ATPDH, ERD5 proline dehydrogenase 1, EARLY RESPONSIVE TO DEHYDRATION 5, ARABIDOPSIS THALIANA PROLINE OXIDASE, Methylenetetrahydrofolate reductase family protein (.1)
AT5G38710 453 / 4e-156 Methylenetetrahydrofolate reductase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034094
[exp]
623 / 0 AT5G38710 494 / 4e-172 Methylenetetrahydrofolate reductase family protein (.1)
Lus10003051
[exp]
618 / 0 AT5G38710 497 / 2e-173 Methylenetetrahydrofolate reductase family protein (.1)
Lus10034095
[exp]
552 / 0 AT5G38710 460 / 2e-160 Methylenetetrahydrofolate reductase family protein (.1)
Lus10003053
[exp]
373 / 2e-126 AT5G38710 311 / 1e-102 Methylenetetrahydrofolate reductase family protein (.1)
Lus10003052
[exp]
73 / 3e-16 AT5G38710 63 / 1e-13 Methylenetetrahydrofolate reductase family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G109300
[exp]
539 / 0 AT5G38710 501 / 3e-175 Methylenetetrahydrofolate reductase family protein (.1)
Potri.004G106400
[exp]
535 / 0 AT5G38710 532 / 0.0 Methylenetetrahydrofolate reductase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0086 FAD_oxidored PF01619 Pro_dh Proline dehydrogenase
Representative CDS sequence
>Lus10005114 pacid=23153406 polypeptide=Lus10005114 locus=Lus10005114.g ID=Lus10005114.BGIv1.0 annot-version=v1.0
ATGGCCACCAAAGCTCTCCGATCAAACATTTCCCTCCTCCGTCAAACCTCCTCCGCCTTCGTCAGGCACCTCAACTCCTCCCCTTCCTCCCTCTCCGCCG
CCCCGCCTCTCTCCTTGGGTACCGTTCCTCATTCCGACGCTGTTGATCATTTCTCCAATCATCACCATCACCATCACCATCACCATCCACCCGCCGACCA
CATCCTCGAGCTCGACGATCACCAAAAACTCTTCGGATCTCTCCCAGCTTCCAAGCTGATTCACGCGTCCGCCGTCCTCCAGGCTTCCGCCGCCGAATCG
GTGGTGGACCTGGGAACCAAGGTGATCAATTCACGCCTCATGGAGGTTGAAGCAGCGAGAGGCATCGTTTACGGCGTCGTAAGACGCTCATTCTACGAGC
ATTTCTGCGCCGGGGAAACTCCGTCGGCGGCGCGTGAGAAGGTCAGGGAGGTGAACCAGGCTGGTCTACGCGCAATGTTGGATTTCTCTGTGGAGTACAC
TTGCGACAATGACGCCTGCAACCGTAACTTGGAAGGCTTCCAACACACCGTCGAATGCGCCATCTCCCTTCCTCCCTCTTCCGTGAGTTTCGTGGTGGTA
AAGATCACGGCAATATCGCCACTAAGACTGCTACAAAGAATGAGCGACTTGCTACGTTGGCATCAGAAAGACCCATCTTTCCAACTCCATTGGAAGCAAA
ACTCCTTCCCGATATTCTCAGAATCCAGTCCATTATACCACACGCTAACAGAACCTCCCCAACTCACACCTGAAGAAGAGCAAGACCTCGAATCAGCCCG
ACAGAGACTACGCACGCTCTGCCAAAGATGCGCGCAAGCCAACTTGCCACTCATGGTTGATGCAGAGGACACTAAGCTCCAGCCTGCCATCGACTACATC
GCCTATTCCGCTGCTATCGAATTCAACACGAGAGACAACCCGGTGGTTTATAACACCATTCAGGCCTATTTGAAGGATGCCAAGGAAAGGCTGGTCCTTG
CCACGAAGGCTGCGGACGAGATAGGATTTGCAATGGGGATTAAGCTTGTCAGAGGTGCTTATATGTCCAGCGAGAGATTGCAGGCTTCTAAGTTGGGTTT
CGAGTCTCCGATCCACGACAGCGTTGAGGATACTCATGCGTGTTTCAATGATTGCGCCGGGTTTATGATTGACCGGGTTGCTTCAGGGTGTGATGGAGTT
GTTCTCGCGACTCATAATCCGGAGTCGGGGAGGATGGCTGCGAGTAAGGCGAGAGAAATGGGGATAATGAAGGGAAGGGTGGAGTTTGCGCAGCTGTATG
GGATGGCGGAATCGTTGTCGATGGGGCTGAAGAATGCAGGGTTTCGAGTTAGTAAGTACATGCCGTTTGGTCCGATTGATATTGTGATGCCTTATTTGCT
AAGGAGGGCAGAGGAGAACAGGGGAATGCTGTCCACTTCAAGCTTTGACAGGGTGCTCATGAGGAGGGAATTGAAGAGGAGGCTGAAATCTGCAGTTTTC
AGCACTTGA
AA sequence
>Lus10005114 pacid=23153406 polypeptide=Lus10005114 locus=Lus10005114.g ID=Lus10005114.BGIv1.0 annot-version=v1.0
MATKALRSNISLLRQTSSAFVRHLNSSPSSLSAAPPLSLGTVPHSDAVDHFSNHHHHHHHHHPPADHILELDDHQKLFGSLPASKLIHASAVLQASAAES
VVDLGTKVINSRLMEVEAARGIVYGVVRRSFYEHFCAGETPSAAREKVREVNQAGLRAMLDFSVEYTCDNDACNRNLEGFQHTVECAISLPPSSVSFVVV
KITAISPLRLLQRMSDLLRWHQKDPSFQLHWKQNSFPIFSESSPLYHTLTEPPQLTPEEEQDLESARQRLRTLCQRCAQANLPLMVDAEDTKLQPAIDYI
AYSAAIEFNTRDNPVVYNTIQAYLKDAKERLVLATKAADEIGFAMGIKLVRGAYMSSERLQASKLGFESPIHDSVEDTHACFNDCAGFMIDRVASGCDGV
VLATHNPESGRMAASKAREMGIMKGRVEFAQLYGMAESLSMGLKNAGFRVSKYMPFGPIDIVMPYLLRRAEENRGMLSTSSFDRVLMRRELKRRLKSAVF
ST

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G30775 PDH1, PRODH, PR... proline dehydrogenase 1, EARLY... Lus10005114
[exp]
0 1
AT4G27680 P-loop containing nucleoside t... Lus10008835
[exp]
1.0 0.8689
AT4G25180 RNA polymerase III RPC4 (.1) Lus10009019
[exp]
7.7 0.8332
AT1G79020 Enhancer of polycomb-like tran... Lus10034778
[exp]
10.1 0.8406
AT1G23890 NHL domain-containing protein ... Lus10030639
[exp]
12.9 0.8453
Lus10040046
[exp]
25.0 0.8196
AT2G39970 PXN, PMP38, APE... peroxisomal NAD carrier, perox... Lus10014839
[exp]
27.0 0.8126
AT1G08390 unknown protein Lus10042503
[exp]
32.2 0.7596
AT1G53530 Peptidase S24/S26A/S26B/S26C f... Lus10025393
[exp]
39.9 0.8152
AT3G26350 unknown protein Lus10011406
[exp]
41.5 0.7719
AT2G36970 UDP-Glycosyltransferase superf... Lus10016127
[exp]
42.2 0.8013

Lus10005114 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.