Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00310 51 / 2e-07 MEE46, EDA8 MATERNAL EFFECT EMBRYO ARREST 46, EMBRYO SAC DEVELOPMENT ARREST 8, Putative membrane lipoprotein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G087500 [exp] 60 / 3e-10 AT4G00310 59 / 9e-10 MATERNAL EFFECT EMBRYO ARREST 46, EMBRYO SAC DEVELOPMENT ARREST 8, Putative membrane lipoprotein (.1.2) Potri.002G161700 [exp] 57 / 3e-09 AT4G00310 55 / 2e-08 MATERNAL EFFECT EMBRYO ARREST 46, EMBRYO SAC DEVELOPMENT ARREST 8, Putative membrane lipoprotein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005116 pacid=23153411 polypeptide=Lus10005116 locus=Lus10005116.g ID=Lus10005116.BGIv1.0 annot-version=v1.0 ATGAGGATTCGGAAGAACGCCGCAAACCTCATCAAGTGGAGGGCTTCTTCAGGCCAAGCAGCTTCCTCCTCCTCCGTCATCTGCCAGCTCAACCAGTCCC CCTGGGATGCGATTTCCTCCACCAACTCCAACTACTCCTCCGCCGTCGACGCTCCTCCCGACTATTTCCCCTCCTCCTACTCCTCCTCCGCCCTCCAGTT GGATAGCTTTACTGGGAATGGTAGCTTAGACGACTCATTTGGCGCCGCTCTCAATGAGAGTGTGGCATCAATGATGGAGGTAGATTACAAGGATGAGACT ACTGTTGGAGTTAAGATGGAAGTCGATATCGACGATGAGGAATTGAACTGCAAGGAAAAGGAGCAAGTGGTGGAGTATCCCAATAACGATCATAATGCTG CTGCTGCTGCTGCAAGTCGACAGAGAAGGAGGGGCGATACGACGTCGTCTGCTCGCCGAGGAGGGAAAGCCAAGTCCAAGGCGGCTAAGAAAGGGGCCAG TTCCAGTCCCTACGAGTTTTACTATTACTCAGGGTTCGGACCGCGGTGGGGGAAGCGGCGCGGAGGAGATAATCCGGACAGCAGAGATCAGGCGGCCACT GAGATGAATGGCGGTGGTACGGCGGCTTCCGGGTCAAGTCGAGGGAATTCGTCGTCATCGCCATCAATGGCTGTGTTTGATTTTGTGGATGAGGAGTATG ATGACGATGATGATGATGATTATGACGACGATGAGGAGGACGGTGCGGGGGAGATTGGCGGGGTTGATTGCAGCAAGAAGCGGATGCGGAAACCGGTGAA GGCCAGATCCCTTAAGTCGCTTATGTGA
AA sequence Show only first row Show all	>Lus10005116 pacid=23153411 polypeptide=Lus10005116 locus=Lus10005116.g ID=Lus10005116.BGIv1.0 annot-version=v1.0 MRIRKNAANLIKWRASSGQAASSSSVICQLNQSPWDAISSTNSNYSSAVDAPPDYFPSSYSSSALQLDSFTGNGSLDDSFGAALNESVASMMEVDYKDET TVGVKMEVDIDDEELNCKEKEQVVEYPNNDHNAAAAAASRQRRRGDTTSSARRGGKAKSKAAKKGASSSPYEFYYYSGFGPRWGKRRGGDNPDSRDQAAT EMNGGGTAASGSSRGNSSSSPSMAVFDFVDEEYDDDDDDDYDDDEEDGAGEIGGVDCSKKRMRKPVKARSLKSLM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00310		MEE46, EDA8	MATERNAL EFFECT EMBRYO ARREST ...		Lus10005116 [exp]	0	1
AT4G18570			Tetratricopeptide repeat (TPR)...		Lus10015292 [exp]	13.5	0.7589
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10026013 [exp]	21.4	0.7479
					Lus10010102 [exp]	39.7	0.6973
					Lus10022054 [exp]	52.4	0.5965
					Lus10042671 [exp]	59.0	0.6232
					Lus10000289 [exp]	73.5	0.5952
AT2G26550		HO2	heme oxygenase 2 (.1.2.3)		Lus10042666 [exp]	89.1	0.6544
AT5G50600		ATHSD1	hydroxysteroid dehydrogenase 1...		Lus10031448 [exp]	122.1	0.6591
AT3G22980			Ribosomal protein S5/Elongatio...		Lus10007838 [exp]	122.3	0.6103
					Lus10008514 [exp]	126.3	0.5878

Compare expression of checked genes

Lus10005116 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.