Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G33340 158 / 4e-47 CDR1 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) AT1G64830 157 / 7e-47 Eukaryotic aspartyl protease family protein (.1) AT1G31450 148 / 3e-43 Eukaryotic aspartyl protease family protein (.1) AT2G35615 147 / 7e-43 Eukaryotic aspartyl protease family protein (.1) AT3G61820 110 / 6e-29 Eukaryotic aspartyl protease family protein (.1) AT3G18490 109 / 1e-28 Eukaryotic aspartyl protease family protein (.1) AT1G01300 108 / 2e-28 Eukaryotic aspartyl protease family protein (.1) AT3G20015 107 / 5e-28 Eukaryotic aspartyl protease family protein (.1) AT2G28010 107 / 6e-28 Eukaryotic aspartyl protease family protein (.1) AT2G28040 103 / 9e-27 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018825 [exp] 247 / 2e-81 AT5G33340 432 / 1e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10022912 [exp] 196 / 1e-61 AT5G33340 450 / 1e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10024903 [exp] 196 / 2e-61 AT5G33340 449 / 3e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10024910 [exp] 192 / 7e-60 AT5G33340 452 / 2e-157 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10041150 [exp] 187 / 8e-59 AT5G33340 399 / 2e-137 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10041151 [exp] 187 / 3e-58 AT5G33340 445 / 1e-154 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10040325 [exp] 187 / 3e-58 AT5G33340 451 / 5e-157 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10023445 [exp] 186 / 9e-58 AT5G33340 448 / 9e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10002613 [exp] 176 / 6e-54 AT5G33340 406 / 4e-139 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G114400 [exp] 150 / 4e-44 AT5G33340 475 / 1e-166 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G087900 [exp] 148 / 2e-43 AT5G33340 430 / 8e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G105300 [exp] 124 / 3e-34 AT2G35615 414 / 2e-142 Eukaryotic aspartyl protease family protein (.1) Potri.007G106300 [exp] 115 / 9e-31 AT3G20015 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 112 / 8e-30 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G063000 [exp] 112 / 1e-29 AT3G20015 560 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 109 / 1e-28 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.010G128200 [exp] 105 / 4e-27 AT1G25510 622 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G232600 [exp] 102 / 6e-26 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1) Potri.006G232400 [exp] 101 / 9e-26 AT5G10770 418 / 4e-143 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10005118 pacid=23153415 polypeptide=Lus10005118 locus=Lus10005118.g ID=Lus10005118.BGIv1.0 annot-version=v1.0 ATGAACATCTCCCTCGGGACACCCCCAGTTCCAATCCTGGCCATCGCCGACACTGGAAGCGACATCGTATGGACACAATGCAAGCCTTGCCCCAGCTGTT ACATGCAGAATGCTCCCTTGTTCAACCCTGCCTCTTCACGAACCTACAAAATGGTGTCGTGCTCATCCAACACATGTTCTTCCCTACGTGACGAAGGAGC CTTCTGCTCTGAAAACGACGCTGTTTGCCATTACCAGGTTGGATATGGAGACCAGTCCCACACGGACGGTGACTTGGCACTTGAAACGTTGACTCTACAG TCAATCTCGAGTGGTTCTGTGTCATTTAACAAGACGTTGATGGGATGTGGCCACAATAATGCTGGAACGTTCAATGCTAATGGTTCGGGGATCGTCGGGT TAGGAGGTGGATCCGCTTCTCTGATTACCCAAATCGGCTCATCAATTGGCTATAAATTTTCTACTGCTTAG
AA sequence Show only first row Show all	>Lus10005118 pacid=23153415 polypeptide=Lus10005118 locus=Lus10005118.g ID=Lus10005118.BGIv1.0 annot-version=v1.0 MNISLGTPPVPILAIADTGSDIVWTQCKPCPSCYMQNAPLFNPASSRTYKMVSCSSNTCSSLRDEGAFCSENDAVCHYQVGYGDQSHTDGDLALETLTLQ SISSGSVSFNKTLMGCGHNNAGTFNANGSGIVGLGGGSASLITQIGSSIGYKFSTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10005118 [exp]	0	1

Compare expression of checked genes

Lus10005118 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.