Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28350 1556 / 0 Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor (.1.2) AT3G61480 1486 / 0 Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor (.1) AT5G28442 110 / 1e-28 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018824 [exp] 2050 / 0 AT5G28350 1679 / 0.0 Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G087900 [exp] 1763 / 0 AT5G28350 1676 / 0.0 Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor (.1.2) Potri.002G162000 [exp] 1761 / 0 AT5G28350 1706 / 0.0 Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07064 [flax] [poplar] RIC1 RIC1
Representative CDS sequence Show only first row Show all	>Lus10005119 pacid=23153398 polypeptide=Lus10005119 locus=Lus10005119.g ID=Lus10005119.BGIv1.0 annot-version=v1.0 ATGGCGTATGGATGGCCGCAGGTGATCCCTCTAGACCAAGGATCTTGCCCTTCCTCGCAGCGAATCATCTATCTCAAAGTCATTAACCGCCTCCTGCTCC TCGTTACTCCTTCTCACCTTGAGCTATGGAGCTCGTCTCAGCGTAAAGTGAGATTGGGGAAGTACAAGAGGGATGCCAAGTCGCTAGAGAAGGACGGCGA GAATTTGCAAGCTGTGTGGAGCCCTGATTCCAAATTGATCGCCATTCTCACTTCTTCTTTCTTTCTTCACATATTCAAGGTCCAATTCACAGATAAAAGA ATACATGTTGGAGGAAAGCAGCCATCTGGATTGTTCCTGGCTAATGTAACTCTTCTACTCTGTGAGCTGGTGCCTTTTGCCCAAAAAGACTTGACAGTGA GCAATATCGTGACTGATAATAAATATTTGCTGCTTGGACTTTCTAATGGATCTTTATATAGTATGTCTTGGAAGGCCGAGTTTTATGGTAGTTTTGATCT TGATCCCAACACACATGGTACTGGTAAAGTTTCCCATTCGTCAAATCAGTCAGCAAATGGGGTTGCTTTGGAAGAGGAGTCCGGAGGTCCTGTGATTAAT CTTAATACGATAAAGAAGATTGCTATTACAACACTAGAACTTTGCTTACCGATGAGGTTGCTGGTCGTCTTATATTCTGATGGACAGCTGGTTCAGTGCT TTGTGAGTAAGAAAGGGTTGAAGCAAGTTGACTGTATTAAAGCAGAAAAAACATTGGGCTCAGGTGATGCCGTTTGCATTTCAGTAGCTTCAGATCAACA AATTCTTGCTGTTGGTAATAGAAGAGGTGCAGTTGACTTGTATGATCTAGCCAACTCTTCATCACGGATTCGAACTGTTTCTCTGTATGATTGGGGGTAT TCTGTGGATCAAACTGGACCTGTCAGTTGTATTGCCTGGACACCTGATAATTCTGCTTTTGCAGTTGGATGGAAATTAAGGGGACTTGCAGTTTGGTCTG TTTCTGGATGTCGTTTGATGTCAACTGTTCGTCAAATTGGATTAGGTAGTGTATCATCTCCAGTAGTTAAATCAAATCAGGAATGGAAATATGAGCCTTT GATGGGTGGCACATCAAAGTTACAATGGGATGAATATGGATATCGGCTTTATGCAACTGAGGAAGGGTCTCTGGAAAGAATTATTGCATTTTCTTTTGGT AAATGCTGCCTTAGTAGGGGAGTGTCTGGCATGACATATGTCCGCCAAGTGATTTACGGCGACGATCGGTTGCTTGTGGTGCAGTCTGAAGATACTGATG AACTTAAGATCTTGCATCTTAACCTTCCGGGCACTTATATCTCCCAAAATTGGCCAGTCCAGCATGTGGCTGCTAGCAAGGATGGGATGTACTTGGCTGT TGCTGGTCTACATGGTTTGATTTTATATGATATACGGCTGAAAAAATGGAGGGTGTTTGGAGATATCAGTCAGGAACAAAAGATTCAGTGCAAGGGTCTG TTATGGCTGGGAAAAATTGTGGTTGTCTGCAACTACATAGATTCTTCTGGCACTTATGAACTGCTCTTCTACCCAAGGTATCATCTTGACCAGAGCTCCT TGCTTTGCCGTAAACTGTTGCTTGCAAAGCCTGTGGTGATGGATGTTTATGAAGATTACATACTTGTTACCTACCATCCATTTGACGTCCTCATATTTCA TGTGCGGATAATTGGTGAGCTACCGCCGTCTAATACACCAGATCTTGAGCTTTCTACAGTACGGGAACTCTCAATAATGACGGCAAAGAGCCATCCTGCA GCAATGCGCTTTATCCCCGATCAGATTCCTAGAGAGAGTTCATTGAACAATCATATTTCATCTTCTTCAGATTTCGTAGCTAGAGAACCTGCAAGATGTC TGATACTGAGAGCAAACGGGGAGCTTTCTCTTTTGGATTTAGATGATGGACGTGAAAGAGAACTTACAAACTCAGTTGAATTATTTTGGGTTACTTGTGG TCCATCGGAAGAGAAGACAAATCTTATCGAGGAAGTTTCCTGGTTGGATTATGGTCACCGTGGCATGCAGGTTTGGTATCCATCTCCAGGTGCTGATCCT TTCATGCAGGAGGACGTCATGCAGTTGGATCCAGAGCTGGAGTTTGATCGTGAAGTTTATCCTTTGGGACTTCTTCCAAATGTAGGAGTTGTTGTTGGCG TATCGCAGAGAATGTCATTCTCGGCATGCACTGAATTCCCTTGTTTTGAGCCTTCTCCTCAAGCCCAAACGATATTGCACTGCCTTCTTAGACACCTGCT TCAGAGGAACAAAAGTGAGGAAGCTTTACGGTTAGCTCAACTATCAGCAGAAAAGCCCCATTTCTCTCACTGTCTAGAGTGGCTTTTGTTTACAGTATTT GACGCAGAGATTTCCAGGAAACATATAAATAAGAACCAGTTATCAGTTCCGGAACATGCAGGCAAGAATTCTCTGTTAGACAAAACCTGTGATTTGATCA GAAACTTCCCGGAATACCTTGATGTGGTTGTAAATGTTGCGAGAAAAACTGATGGTCGACACTGGGCGGATTTGTTTACTGCTGCTGGAAGATCAACTGA GTTATTTGAGGAATGCTTTCAGAGGAGATGGTATAGGACTGCAGCATGCTATATACTGGTAATTGCTAAACTAGAAGGTCCTGCCGTCAGTCAGTATTGT GCTTTACGTTTATTACAGGCTACGCTGGACGAGTCCTTATATGAACTTGCTGGGGAGCTGGTGCGATTCTTACTGAGGTCTGGAAAGGATTATGAACCGA CATCACCAGATTCAGACAAACTATCGTCCCCCAGATTCTTGGGCTATTTCCTGTTTCGTTCCAGTTATAAAAAGTCATCTTTGGATAAGAGCTCCACGTT TAAAGAGCAGAACGCTCATATTGCTTCTGTGAAGAACATTTTAGAAAGCCATGCTAGTTACCTGATGTCTGGGAAGGAACTTACCAAGCTGGTAGCCTTT GTAAAAGGCACTCAGTTTGATTTAGTGGAGTATCTGCAAAGAGAGCGGTATGGCTCAGCTCGCCTGGAGAATTTCGCATCAGGGCTGGAACTAATTGGGC AGAAGCTTCAAATGGGCACGCTTCAGAGCCGGTTAGATGCAGAGTTTCTATTAGCTCATATGTGTTCTGTCAAGTTCAAGGAGTGGATAGTTGTCCTGGC CACCCTCCTCAGACGGTCTGAGGTACTTTTTGATCTTTTCCACCATGATGCACGGCTGTGGAAAGCATATAGCATCACCCTTCAGTCACACCCAACATTT GCCGAGTACAACGATCTTCTTCAAGCCTTGCAAGAACAGCTCTCTTTAGCCTCGAACTCAGAACAGACATGA
AA sequence Show only first row Show all	>Lus10005119 pacid=23153398 polypeptide=Lus10005119 locus=Lus10005119.g ID=Lus10005119.BGIv1.0 annot-version=v1.0 MAYGWPQVIPLDQGSCPSSQRIIYLKVINRLLLLVTPSHLELWSSSQRKVRLGKYKRDAKSLEKDGENLQAVWSPDSKLIAILTSSFFLHIFKVQFTDKR IHVGGKQPSGLFLANVTLLLCELVPFAQKDLTVSNIVTDNKYLLLGLSNGSLYSMSWKAEFYGSFDLDPNTHGTGKVSHSSNQSANGVALEEESGGPVIN LNTIKKIAITTLELCLPMRLLVVLYSDGQLVQCFVSKKGLKQVDCIKAEKTLGSGDAVCISVASDQQILAVGNRRGAVDLYDLANSSSRIRTVSLYDWGY SVDQTGPVSCIAWTPDNSAFAVGWKLRGLAVWSVSGCRLMSTVRQIGLGSVSSPVVKSNQEWKYEPLMGGTSKLQWDEYGYRLYATEEGSLERIIAFSFG KCCLSRGVSGMTYVRQVIYGDDRLLVVQSEDTDELKILHLNLPGTYISQNWPVQHVAASKDGMYLAVAGLHGLILYDIRLKKWRVFGDISQEQKIQCKGL LWLGKIVVVCNYIDSSGTYELLFYPRYHLDQSSLLCRKLLLAKPVVMDVYEDYILVTYHPFDVLIFHVRIIGELPPSNTPDLELSTVRELSIMTAKSHPA AMRFIPDQIPRESSLNNHISSSSDFVAREPARCLILRANGELSLLDLDDGRERELTNSVELFWVTCGPSEEKTNLIEEVSWLDYGHRGMQVWYPSPGADP FMQEDVMQLDPELEFDREVYPLGLLPNVGVVVGVSQRMSFSACTEFPCFEPSPQAQTILHCLLRHLLQRNKSEEALRLAQLSAEKPHFSHCLEWLLFTVF DAEISRKHINKNQLSVPEHAGKNSLLDKTCDLIRNFPEYLDVVVNVARKTDGRHWADLFTAAGRSTELFEECFQRRWYRTAACYILVIAKLEGPAVSQYC ALRLLQATLDESLYELAGELVRFLLRSGKDYEPTSPDSDKLSSPRFLGYFLFRSSYKKSSLDKSSTFKEQNAHIASVKNILESHASYLMSGKELTKLVAF VKGTQFDLVEYLQRERYGSARLENFASGLELIGQKLQMGTLQSRLDAEFLLAHMCSVKFKEWIVVLATLLRRSEVLFDLFHHDARLWKAYSITLQSHPTF AEYNDLLQALQEQLSLASNSEQT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28350			Quinoprotein amine dehydrogena...		Lus10005119 [exp]	0	1
AT1G24460		TNO1	TGN-localized SYP41 interactin...		Lus10036938 [exp]	3.3	0.8640
AT5G58510			unknown protein		Lus10031287 [exp]	3.9	0.8890
AT4G32120			Galactosyltransferase family p...		Lus10001920 [exp]	4.2	0.8762
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Lus10023394 [exp]	4.8	0.9006
AT2G27900			unknown protein		Lus10000865 [exp]	8.5	0.8683
AT3G50590			Transducin/WD40 repeat-like su...		Lus10002967 [exp]	10.9	0.8934
AT1G19430			S-adenosyl-L-methionine-depend...		Lus10000715 [exp]	11.4	0.8189
AT5G19010		ATMPK16	mitogen-activated protein kina...		Lus10041234 [exp]	12.0	0.8036
AT1G10130		ATECA3, ECA3	ARABIDOPSIS THALIANA ER-TYPE C...		Lus10018668 [exp]	12.2	0.8675
AT1G54560		PCR1, ATXIE, XI...	MYOSIN XI E, Myosin family pro...		Lus10033864 [exp]	12.8	0.8826

Compare expression of checked genes

Lus10005119 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.