Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00300 351 / 1e-116 fringe-related protein (.1.2) AT5G24010 262 / 7e-79 Protein kinase superfamily protein (.1) AT3G46290 232 / 8e-68 HERK1 hercules receptor kinase 1 (.1) AT5G61350 211 / 6e-60 Protein kinase superfamily protein (.1) AT5G59700 204 / 8e-58 Protein kinase superfamily protein (.1) AT2G21480 204 / 2e-57 Malectin/receptor-like protein kinase family protein (.1) AT4G39110 203 / 3e-57 Malectin/receptor-like protein kinase family protein (.1) AT5G54380 181 / 2e-49 THE1 THESEUS1, protein kinase family protein (.1) AT2G39360 166 / 3e-44 Protein kinase superfamily protein (.1) AT2G23200 156 / 8e-41 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018823 [exp] 735 / 0 AT4G00300 401 / 2e-136 fringe-related protein (.1.2) Lus10027509 [exp] 273 / 6e-83 AT5G24010 996 / 0.0 Protein kinase superfamily protein (.1) Lus10039274 [exp] 267 / 1e-80 AT5G24010 997 / 0.0 Protein kinase superfamily protein (.1) Lus10028140 [exp] 221 / 6e-64 AT3G46290 1024 / 0.0 hercules receptor kinase 1 (.1) Lus10042844 [exp] 219 / 4e-63 AT3G46290 1025 / 0.0 hercules receptor kinase 1 (.1) Lus10021632 [exp] 213 / 2e-60 AT5G61350 971 / 0.0 Protein kinase superfamily protein (.1) Lus10037887 [exp] 204 / 1e-57 AT5G54380 1279 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10000562 [exp] 201 / 3e-56 AT5G61350 965 / 0.0 Protein kinase superfamily protein (.1) Lus10028805 [exp] 199 / 1e-55 AT4G39110 1139 / 0.0 Malectin/receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G088100 [exp] 487 / 3e-170 AT4G00300 420 / 1e-143 fringe-related protein (.1.2) Potri.017G143049 [exp] 275 / 8e-84 AT5G24010 1071 / 0.0 Protein kinase superfamily protein (.1) Potri.004G079700 [exp] 271 / 3e-82 AT5G24010 1031 / 0.0 Protein kinase superfamily protein (.1) Potri.009G026600 [exp] 238 / 7e-70 AT3G46290 1093 / 0.0 hercules receptor kinase 1 (.1) Potri.001G234200 [exp] 232 / 1e-67 AT3G46290 1106 / 0.0 hercules receptor kinase 1 (.1) Potri.015G061700 [exp] 211 / 8e-60 AT5G61350 1020 / 0.0 Protein kinase superfamily protein (.1) Potri.010G213200 [exp] 207 / 1e-58 AT3G46290 808 / 0.0 hercules receptor kinase 1 (.1) Potri.004G158700 [exp] 198 / 2e-55 AT4G39110 1199 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Potri.009G120400 [exp] 190 / 1e-52 AT4G39110 1210 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Potri.011G128000 [exp] 187 / 2e-51 AT5G54380 1231 / 0.0 THESEUS1, protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF11721 [flax] [poplar] Malectin Malectin domain
Representative CDS sequence Show only first row Show all	>Lus10005120 pacid=23153405 polypeptide=Lus10005120 locus=Lus10005120.g ID=Lus10005120.BGIv1.0 annot-version=v1.0 ATGGGAACCCAACGTGCAACCTCCACCTTTCTTCTCCTCCTTGCCTTCTCTGCCGTCCTACTCTCCTCCCTCGCCTCTGCTTTCTCCCCCGCCGACAACC ACCTCATCAATTGCGGCTCCCCCGTCGACGCCGTCCTCCTCGACACCCGCCGTTTCGTCTCCGATTTCCACTCTTCCGATCCCGCCACTCCGCTTCGCTG CTCCTCTCTCACCACTGCCCTCGTAAATGGATCTCCCCAATCCGGATCGGATCAAATCTATCACACGGCTCGAGCTTTCAGGAAACCGACCAAATACGCG TTCAATATCAACCAGCCTGGAACTCACATGGTACGCCTCCATTTCGCCCCTTTCGTTTCCTCCGATTTGGATTTGACAGAGTCCCGCTTCCACGTTCTGG TTGGAGATTACGTCGTCTTGACCAACTTCACTGCCTCAACAACCACTCTGGTTAAGGAGTATTTCATCTGGGTTAGTAAGAACAAGCTTGTAGTTTCGTT TGTGCCTACTGAAAAGGGTGAATTAGGGTTTGTGAACGCAATTGAGGTCATCTCTGCTCCTAAAGATCTACTTGCTGACACGGCTACTCTCTTGACCGGC GGCAAGGCTGATAAAATCCAAGGGCTGAGTAAGCAAGGTCTTGAAACTGTGCACAGGGTGAACGTTGGAGGTCGGAAGGTGACTCCTTTTAACGATTCCT TGTGGAGAACTTGGATTCCGGATGATGGGTTCTTCAAATCGAGTGATGTTTCTAGTAAGGTTTCTTTCAGTGGTAGGATTAACTACCAGGTTGGAGGGGC TAGTCGAGAAGTCTGTCCCGATTTTGTGTATAACAGTGCTAGAGTAATTGCTAGCAAGAATTCGTCAATTCCTTTGGCGAATATGACATGGGCGTTTCCA TTGACTGGAGGTTACAGGTATCTTGTAAGGCTGCACTTCTGTGACATTGCTAGCATATCGCTTGGGATGATCCGCTTTAATGTCTATATCAACGGCCATT TGGCTAACGAGGATTTGGACCTCTCCTCAATTACTTACGAGCTGGCCTCTCCGTATTATGCTGATTTTGTGGTTGAAACTGATGAATCGGAAGGAGATGT AAGCATCAGTGTCGGGCATTCTCGCTCAAGCATGGCTTATGCTATTGATGGTATTTTGAATGGAGTTGAGATAATGAGGATGAATAACTCAATGGGTAGT TTCGACGGGAAGGTGTGTACAGGGATGGCCCTGAAGAGGTGGCCTAGACACCATTCTGGTGGCTTATTCACATTGGCTGCTGTGCTGTGCCTACTCCTTA GTGTTTCTCTGATCATGAGGAGGAGGATGGTGACAATTAAGGACTCGTTTTCATGGTCTAAACTTGCTACTGAAGTTCCAGAGGTGAATATGAAAGATCG GTCATCATTGAATGGTAAGGTCTGA
AA sequence Show only first row Show all	>Lus10005120 pacid=23153405 polypeptide=Lus10005120 locus=Lus10005120.g ID=Lus10005120.BGIv1.0 annot-version=v1.0 MGTQRATSTFLLLLAFSAVLLSSLASAFSPADNHLINCGSPVDAVLLDTRRFVSDFHSSDPATPLRCSSLTTALVNGSPQSGSDQIYHTARAFRKPTKYA FNINQPGTHMVRLHFAPFVSSDLDLTESRFHVLVGDYVVLTNFTASTTTLVKEYFIWVSKNKLVVSFVPTEKGELGFVNAIEVISAPKDLLADTATLLTG GKADKIQGLSKQGLETVHRVNVGGRKVTPFNDSLWRTWIPDDGFFKSSDVSSKVSFSGRINYQVGGASREVCPDFVYNSARVIASKNSSIPLANMTWAFP LTGGYRYLVRLHFCDIASISLGMIRFNVYINGHLANEDLDLSSITYELASPYYADFVVETDESEGDVSISVGHSRSSMAYAIDGILNGVEIMRMNNSMGS FDGKVCTGMALKRWPRHHSGGLFTLAAVLCLLLSVSLIMRRRMVTIKDSFSWSKLATEVPEVNMKDRSSLNGKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00300			fringe-related protein (.1.2)		Lus10005120 [exp]	0	1
AT2G33580			Protein kinase superfamily pro...		Lus10008586 [exp]	2.0	0.9444
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Lus10034180 [exp]	3.5	0.9489
AT4G29780			unknown protein		Lus10011946 [exp]	4.2	0.9479
AT5G39865			Glutaredoxin family protein (....		Lus10017335 [exp]	6.0	0.9199
AT1G06450			Polynucleotidyl transferase, r...		Lus10035078 [exp]	6.5	0.9463
AT4G00300			fringe-related protein (.1.2)		Lus10018823 [exp]	7.3	0.9398
AT4G29780			unknown protein		Lus10027622 [exp]	7.4	0.9403
AT5G39865			Glutaredoxin family protein (....		Lus10001669 [exp]	7.9	0.9157
AT3G03280			unknown protein		Lus10013490 [exp]	8.4	0.9354
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Lus10009271 [exp]	9.2	0.9234

Compare expression of checked genes

Lus10005120 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.