Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00290 444 / 3e-153 Mechanosensitive ion channel protein (.1) AT4G00234 259 / 4e-84 unknown protein AT5G10490 62 / 6e-10 MSL2 MSCS-like 2 (.1.2.3) AT1G58200 60 / 2e-09 MSL3 MSCS-like 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018822 [exp] 760 / 0 AT4G00290 529 / 0.0 Mechanosensitive ion channel protein (.1) Lus10009277 [exp] 61 / 1e-09 AT1G58200 710 / 0.0 MSCS-like 3 (.1.2) Lus10002652 [exp] 55 / 9e-08 AT5G10490 780 / 0.0 MSCS-like 2 (.1.2.3) Lus10012733 [exp] 54 / 2e-07 AT1G58200 630 / 0.0 MSCS-like 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G162100 [exp] 483 / 1e-167 AT4G00290 578 / 0.0 Mechanosensitive ion channel protein (.1) Potri.014G088200 [exp] 474 / 2e-164 AT4G00290 580 / 0.0 Mechanosensitive ion channel protein (.1) Potri.002G105900 [exp] 61 / 9e-10 AT1G58200 729 / 0.0 MSCS-like 3 (.1.2) Potri.005G154000 [exp] 58 / 8e-09 AT1G58200 734 / 0.0 MSCS-like 3 (.1.2) Potri.007G011100 [exp] 56 / 4e-08 AT5G10490 714 / 0.0 MSCS-like 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00924 [flax] [poplar] MS_channel Mechanosensitive ion channel
Representative CDS sequence Show only first row Show all	>Lus10005121 pacid=23153409 polypeptide=Lus10005121 locus=Lus10005121.g ID=Lus10005121.BGIv1.0 annot-version=v1.0 ATGTTTGGCAAACGAAATGAGTTTTCTAAGTCCGACTCTTATCGGAGTTCAAAATCCTTCAACTCTATTTCTTCACCCGCATTGCTTGGTAGAAGAACTA TTGCTTTTTCCTCGTTTAGTCCTTTGTTGATTCAACGCTCTTATTTCTCGACTTCCGGTGGTAAAGCTGATAAACCTATCGGTGATGTTTCTGTTGGATC TGGAAGTGATGGGGCTGACGCCAGCAACAGAATCGCTGGTGGTGATTGGATGGATAGAATTAAAGATGTATGGCATAATGCAAGTGATACTTTCAACTAT ACAGCAGAAAAGGCTAAGGAGACCTCTGATGCATTAACGCCTCATGTTCAGCATGTTCTTGATTCGTATCCTTATCTGAACACTGTGATTGTTCCAGTTA GTTACACAGTAGCCGGCACTGTCTTGGCTTGGGTTGTAATGCCCAAACTCTTGAGGAGATTTCAAAGGTTTGCTATGCAAAGTCCTGGTGGAGTACTATA CACCAGCATAGTCGGTGAAATAGTTCCTTATGAGAAAAGTGTCTGGGGTGCTCTTGAGTATCCTGTTCGTTACTTGATTACCTTCATGGCATTTTCACAA ATTTGTACGATGGTAGCTCCAACTACTGTGGCAGCGCAATACCTTGGACAAGTATGGAAGGGTGCGATCACGATTTCTTTGGTATGGTTTCTTCACCGCT GGAAGACCAACTTACTCAGTCGTGCAATGGCTTCTCATACTTTGGAAATGGCTGACCGAGAGAAGTGGTTAACTTTCGACAAAGTTTCTTCTGTTGGGCT GTTTGGTATTGGCCTTACAGCTTTTGCTGAAGCATCAGGAGTAGCTGTGCAGTCCATTTTGACAGTGGGGGGAATTGGAGGAGTGGCTACTGCATTTGCT GCCAGAGATATCCTTGGAAATTTTCTTAGCGGTATATCTATGCAAGCTTCACACCCTTTTTCACTTGGAGATACCATAAAGGCAAGCAGAGAAACTCTTG TTCTATTTTCATATTTTAGCTCAACTTCATCTGCTGGAACAGCTGATTCTATTGAAGGTCAAGTGGTTGAAATGGGACTAACTACAACAATGTTACTAAA TTCTGAGAAGTTCCCTGTCATCGTTCCAAATTCGTTGTTTTCTAGTCAGGTGATCGTAAACAAGTCTCGTGCTCACTTTCGGGCCCTGGTAAAACAAGTT CCTATAGTGGTTGAGGATCTTGACAAGATTGGAAAGATATCGACTGAGATTGAGAGTATGTTGAAGTCAAATCCAAAGAGTAAATATGAATGCTATGCTG CTGAACAAGAGATATTATTGGAATCGGCTCGCAAAATCAAGGAGAATGGTGCCAGCTTGGGCAGCACTTGGCAATCATGA
AA sequence Show only first row Show all	>Lus10005121 pacid=23153409 polypeptide=Lus10005121 locus=Lus10005121.g ID=Lus10005121.BGIv1.0 annot-version=v1.0 MFGKRNEFSKSDSYRSSKSFNSISSPALLGRRTIAFSSFSPLLIQRSYFSTSGGKADKPIGDVSVGSGSDGADASNRIAGGDWMDRIKDVWHNASDTFNY TAEKAKETSDALTPHVQHVLDSYPYLNTVIVPVSYTVAGTVLAWVVMPKLLRRFQRFAMQSPGGVLYTSIVGEIVPYEKSVWGALEYPVRYLITFMAFSQ ICTMVAPTTVAAQYLGQVWKGAITISLVWFLHRWKTNLLSRAMASHTLEMADREKWLTFDKVSSVGLFGIGLTAFAEASGVAVQSILTVGGIGGVATAFA ARDILGNFLSGISMQASHPFSLGDTIKASRETLVLFSYFSSTSSAGTADSIEGQVVEMGLTTTMLLNSEKFPVIVPNSLFSSQVIVNKSRAHFRALVKQV PIVVEDLDKIGKISTEIESMLKSNPKSKYECYAAEQEILLESARKIKENGASLGSTWQS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00290			Mechanosensitive ion channel p...		Lus10005121 [exp]	0	1
AT5G49570		ATPNG1	peptide-N-glycanase 1 (.1)		Lus10015918 [exp]	5.6	0.8456
AT3G25840			Protein kinase superfamily pro...		Lus10035032 [exp]	6.8	0.8388
AT1G07745		SSN1, ATRAD51D,...	SUPPRESOR OF SNI1, homolog of ...		Lus10025465 [exp]	8.7	0.8333
AT1G57540			unknown protein		Lus10024000 [exp]	11.3	0.8034
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10012319 [exp]	14.7	0.8209
AT3G56320			PAP/OAS1 substrate-binding dom...		Lus10034219 [exp]	14.8	0.8100
AT5G36930			Disease resistance protein (TI...		Lus10018972 [exp]	15.6	0.8388
AT5G38220			alpha/beta-Hydrolases superfam...		Lus10028497 [exp]	17.1	0.7738
AT4G02030			Vps51/Vps67 family (components...		Lus10036541 [exp]	18.3	0.7943
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Lus10041796 [exp]	19.7	0.8063

Compare expression of checked genes

Lus10005121 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.