Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46080 433 / 1e-152 unknown protein AT1G01550 395 / 1e-137 BPS1 BYPASS 1, Protein of unknown function (DUF793) (.1), Protein of unknown function (DUF793) (.2) AT4G01360 233 / 2e-74 unknown protein AT1G43630 54 / 9e-08 Protein of unknown function (DUF793) (.1) AT1G18740 47 / 9e-06 Protein of unknown function (DUF793) (.1) AT3G61500 0 / 1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018821 [exp] 670 / 0 AT2G46080 431 / 5e-152 unknown protein Lus10036385 [exp] 522 / 0 AT2G46080 434 / 4e-153 unknown protein Lus10007920 [exp] 504 / 2e-180 AT2G46080 433 / 8e-153 unknown protein Lus10005326 [exp] 63 / 6e-11 AT1G01550 61 / 3e-10 BYPASS 1, Protein of unknown function (DUF793) (.1), Protein of unknown function (DUF793) (.2) Lus10039581 [exp] 59 / 1e-09 AT1G01550 63 / 5e-11 BYPASS 1, Protein of unknown function (DUF793) (.1), Protein of unknown function (DUF793) (.2) Lus10018883 [exp] 50 / 2e-06 AT1G18740 479 / 1e-169 Protein of unknown function (DUF793) (.1) Lus10028578 [exp] 47 / 1e-05 AT1G18740 488 / 4e-173 Protein of unknown function (DUF793) (.1) Lus10022635 [exp] 44 / 8e-05 AT4G35200 175 / 3e-54 Arabidopsis protein of unknown function (DUF241) (.1) Lus10042809 [exp] 43 / 0.0002 AT1G74450 470 / 7e-166 Protein of unknown function (DUF793) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G162600 [exp] 481 / 1e-171 AT2G46080 456 / 7e-162 unknown protein Potri.014G088600 [exp] 476 / 1e-169 AT2G46080 431 / 1e-151 unknown protein Potri.010G171000 [exp] 119 / 2e-30 AT1G01550 69 / 7e-13 BYPASS 1, Protein of unknown function (DUF793) (.1), Protein of unknown function (DUF793) (.2) Potri.008G085600 [exp] 96 / 2e-22 AT2G46080 52 / 3e-07 unknown protein Potri.002G067800 [exp] 49 / 2e-06 AT1G18740 463 / 1e-163 Protein of unknown function (DUF793) (.1) Potri.019G084400 [exp] 46 / 2e-05 AT1G77855 47 / 5e-06 unknown protein Potri.003G018700 [exp] 41 / 0.001 AT1G22030 266 / 2e-87 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF05633 [flax] [poplar] BPS1 Protein BYPASS1-related
Representative CDS sequence Show only first row Show all	>Lus10005122 pacid=23153410 polypeptide=Lus10005122 locus=Lus10005122.g ID=Lus10005122.BGIv1.0 annot-version=v1.0 ATGAGTCGTCCCCAGGAACCACACCGACCCTTTTTCGCCTTCGGGAATCCTTTCAAAATGATATCGCCAAAGGGTTCACAGATGTCTCCGAAGCTTCTTT CTATATTGAACTCTTTTGAGGAAATCTTGGCAGGGAGGTTAAGGAAACTTATACCAGAAGACAAAGGTGAAGTTTTGGGCCTGACATGGATGAAATCAGC CTTTGAGTCACTCTGTGAGACTCACAATGATATTAAGACCCTCGTAACAAGTCTCGAGCTTCCCGTCACTGACTGGGATCAGAAATGGGTTGATGTCTAT TTGGACATCAGCATAAGGTTGCTCGACATTTGCAATGCCTTTACCTCTGAGATTACCAGGCTTAACCAAGGTAAACTCTTGCTTCAATGTGTCCTGCATA ATTTGGAATCCGGGACTGCTGAGCGGTATATCAAGGCACGCTCTTCCCTTGATAGCTGGAGACAACATATTTCAACAAGGAACCCAAGGGTCCAGAACTG CGGTACAATCCTAGATGGTCTCATGGAATCATTGGATCTGCCCAAGGTTAAGAAATCAGCCAAAGGGAAGGTCCTCATGCGTGCCATGTATGGGGTCAAG GTGGAAACGATATTTCTCTGCAGTGTTTTCGCCTCTGCCTTCTCGAATTCCTCGAAGAATCTGTTGGATTTGAGCGTAGCAGACACATTCGTGTGGGCAC AGGCTTTTCGCGATTTGCAAACTGGAGTGAACGAAGAGTTGAGAGAGAGATTATCATGTGGGAAGGTGACTGCATTGAAAGAGGTGGACGAGGTTGAATC TATAGCGAAGAAGATGTATCCAATGATTGAAGATGGAATGGAGGAAGCCTTGAAGAGTTGCTTGAAGGAGTTGCAGAGCGGAGCAGAAGAACTTAGTAAA GGGTTGGATGTGGTTGGAAACCAAGTGGACACCTTTTTCAAAATAGTTCTAAGTGGCCGTGATGCTTTGCTTTGTAATATTAGAGTGTCTAGTAATGATG TGAGGGGAAGCAACGGAAGGGAACAAGTTGTTAGATGA
AA sequence Show only first row Show all	>Lus10005122 pacid=23153410 polypeptide=Lus10005122 locus=Lus10005122.g ID=Lus10005122.BGIv1.0 annot-version=v1.0 MSRPQEPHRPFFAFGNPFKMISPKGSQMSPKLLSILNSFEEILAGRLRKLIPEDKGEVLGLTWMKSAFESLCETHNDIKTLVTSLELPVTDWDQKWVDVY LDISIRLLDICNAFTSEITRLNQGKLLLQCVLHNLESGTAERYIKARSSLDSWRQHISTRNPRVQNCGTILDGLMESLDLPKVKKSAKGKVLMRAMYGVK VETIFLCSVFASAFSNSSKNLLDLSVADTFVWAQAFRDLQTGVNEELRERLSCGKVTALKEVDEVESIAKKMYPMIEDGMEEALKSCLKELQSGAEELSK GLDVVGNQVDTFFKIVLSGRDALLCNIRVSSNDVRGSNGREQVVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46080			unknown protein		Lus10005122 [exp]	0	1
AT5G02290		NAK	Protein kinase superfamily pro...		Lus10023794 [exp]	1.4	0.9470
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10012319 [exp]	2.0	0.9159
AT5G02290		NAK	Protein kinase superfamily pro...		Lus10003972 [exp]	2.0	0.9358
AT1G53050			Protein kinase superfamily pro...		Lus10033684 [exp]	2.4	0.9023
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Lus10022812 [exp]	2.4	0.9180
AT4G24020		NLP7	NIN like protein 7 (.1)		Lus10001810 [exp]	3.5	0.8820
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10031029 [exp]	4.0	0.8982
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Lus10018810 [exp]	4.5	0.9096
AT1G59710			Protein of unknown function (D...		Lus10013281 [exp]	5.5	0.8866
AT2G23810		TET8	tetraspanin8 (.1)		Lus10008891 [exp]	5.7	0.8865

Compare expression of checked genes

Lus10005122 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.